Comparing Synpcc7942_0948 Synpcc7942_0948 permease protein of sugar ABC transporter to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 2 hits to proteins with known functional sites (download)
P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
32% identity, 76% coverage: 66:275/275 of query aligns to 84:296/296 of P68183
P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
25% identity, 96% coverage: 12:275/275 of query aligns to 20:281/281 of P94530
>Synpcc7942_0948 Synpcc7942_0948 permease protein of sugar ABC transporter
MKPRFRWAIAALALSLFSLAPILWQLLTSIKVNADIAAIPTIYWPRQWTVEHYQALWQQT
PAFGRYLLNSAVVSAIATLAALLIGTPCAYAIARRRDRSSQVLVGSLLLVTLFPYVLLFQ
GLLEVVRWLQWGNNYAALVVPYTALNLPLVILLLRSFFEQLPPELEEAAQIDGLSLGQRL
WLILVPLTAPALVTAGILAFIFSWNEYVLALSFISQQALKTVPIAVAEIGGISIFDVPYG
DIAAATVVATLPLIGLVLVAQRRILEGLTAGAVKG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory