SitesBLAST
Comparing Synpcc7942_1501 FitnessBrowser__SynE:Synpcc7942_1501 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
42% identity, 96% coverage: 18:542/546 of query aligns to 1:518/526 of 3dc2A
- active site: N96 (= N113), R230 (= R247), D254 (= D271), E259 (= E276), H277 (= H296)
- binding serine: Y458 (≠ H479), D460 (= D481), R461 (≠ M482), P462 (= P483), G463 (= G484), A464 (≠ I485), L465 (≠ I486), L484 (≠ V505)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
41% identity, 96% coverage: 17:542/546 of query aligns to 1:517/525 of 3ddnB
O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
40% identity, 79% coverage: 20:452/546 of query aligns to 8:440/533 of O43175
- T78 (≠ V89) binding NAD(+)
- R135 (= R146) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
- RI 155:156 (≠ KI 166:167) binding NAD(+)
- D175 (= D186) binding NAD(+)
- T207 (≠ I218) binding NAD(+)
- CAR 234:236 (= CAR 245:247) binding NAD(+)
- D260 (= D271) binding NAD(+)
- V261 (= V272) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
- HLGA 283:286 (= HLGA 296:299) binding NAD(+)
- A373 (= A386) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
- G377 (= G390) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
- V425 (≠ A437) to M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
- 490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987
6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
47% identity, 55% coverage: 20:322/546 of query aligns to 4:305/305 of 6plfA
7dkmA Phgdh covalently linked to oridonin (see paper)
47% identity, 55% coverage: 20:320/546 of query aligns to 4:303/306 of 7dkmA
- binding nicotinamide-adenine-dinucleotide: T74 (≠ V89), A102 (= A117), G148 (= G163), R151 (≠ K166), I152 (= I167), Y170 (= Y185), D171 (= D186), P172 (= P187), I173 (≠ F188), H202 (= H217), T203 (≠ I218), P204 (= P219), T209 (= T224), C230 (= C245), A231 (= A246), R232 (= R247), H279 (= H296), G281 (= G298)
- binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (≠ V30), K17 (≠ D33), I18 (= I34), E293 (≠ V310)
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
47% identity, 55% coverage: 20:320/546 of query aligns to 3:302/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ V162), G147 (= G163), L148 (= L164), G149 (= G165), R150 (≠ K166), I151 (= I167), G152 (= G168), D170 (= D186), H201 (= H217), T202 (≠ I218), P203 (= P219)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
47% identity, 55% coverage: 20:320/546 of query aligns to 3:302/302 of 6rihA
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
47% identity, 55% coverage: 20:320/546 of query aligns to 3:302/303 of 6plgA
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
47% identity, 55% coverage: 20:319/546 of query aligns to 3:301/301 of 6rj5A
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
47% identity, 55% coverage: 20:318/546 of query aligns to 2:299/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N113), A100 (= A117), R149 (≠ K166), I150 (= I167), Y168 (= Y185), D169 (= D186), P170 (= P187), I171 (≠ F188), H200 (= H217), T201 (≠ I218), P202 (= P219), T207 (= T224), C228 (= C245), A229 (= A246), R230 (= R247), H277 (= H296), G279 (= G298)
6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
47% identity, 54% coverage: 20:316/546 of query aligns to 2:297/297 of 6rj3A
6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
47% identity, 55% coverage: 21:320/546 of query aligns to 1:299/299 of 6rj2A
- binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G165), I148 (= I167), Y166 (= Y185), D167 (= D186), P168 (= P187), I169 (≠ F188), I170 (= I189), H198 (= H217), T199 (≠ I218), L208 (= L227), R228 (= R247)
6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
46% identity, 55% coverage: 20:319/546 of query aligns to 2:292/292 of 6plfB