Comparing Synpcc7942_1794 Synpcc7942_1794 succinyldiaminopimelate transaminase to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
40% identity, 94% coverage: 17:386/392 of query aligns to 1:371/380 of 2x5dD
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
36% identity, 93% coverage: 25:388/392 of query aligns to 23:385/393 of 6l1nA
Sites not aligning to the query:
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
35% identity, 97% coverage: 7:388/392 of query aligns to 6:386/393 of 6l1lB
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
35% identity, 97% coverage: 7:388/392 of query aligns to 6:386/392 of 6l1oB
2o1bA Structure of aminotransferase from staphylococcus aureus
34% identity, 91% coverage: 35:389/392 of query aligns to 21:371/376 of 2o1bA
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
29% identity, 93% coverage: 25:390/392 of query aligns to 16:382/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
29% identity, 93% coverage: 25:390/392 of query aligns to 16:382/388 of 1gd9A
2o0rA The three-dimensional structure of n-succinyldiaminopimelate aminotransferase from mycobacterium tuberculosis (see paper)
31% identity, 97% coverage: 8:387/392 of query aligns to 4:381/385 of 2o0rA
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
28% identity, 98% coverage: 6:389/392 of query aligns to 1:391/393 of 3jtxB
1j32A Aspartate aminotransferase from phormidium lapideum
28% identity, 99% coverage: 4:390/392 of query aligns to 1:384/388 of 1j32A
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
27% identity, 99% coverage: 6:392/392 of query aligns to 4:384/385 of Q56232
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
27% identity, 98% coverage: 6:390/392 of query aligns to 4:382/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
27% identity, 98% coverage: 6:390/392 of query aligns to 4:382/382 of 1bjwA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
27% identity, 98% coverage: 6:390/392 of query aligns to 4:382/382 of 1b5oA
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
27% identity, 98% coverage: 6:390/392 of query aligns to 4:382/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
27% identity, 98% coverage: 6:390/392 of query aligns to 4:382/382 of 1gc3A
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
24% identity, 98% coverage: 6:390/392 of query aligns to 10:382/384 of 1o4sB
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
24% identity, 99% coverage: 6:392/392 of query aligns to 2:370/370 of Q58097
1u08A Crystal structure and reactivity of ybdl from escherichia coli identify a methionine aminotransferase function. (see paper)
25% identity, 97% coverage: 9:389/392 of query aligns to 7:382/382 of 1u08A
5yhvB Crystal structure of an aminotransferase from mycobacterium tuberculosis
29% identity, 91% coverage: 34:390/392 of query aligns to 31:384/387 of 5yhvB
>Synpcc7942_1794 Synpcc7942_1794 succinyldiaminopimelate transaminase
MPNFRLSQRLAPLQRNVFADMDRAKAVAIAAGREVIDLSLGSSDLPAPDHVVAVIAASLQ
DPSTHGYLLHQGTLPFRQVAAAWYERKFGLGVDPETEVLLLIGSQEGTAHLPLAVMEPGE
IALLQDPGYPSHAGGVYLAGGEIYRLPTTADRGFLPDFSTIPTEILSRSRLLVLSYPHNP
TTAIAPLAFFEEAVAFCRHHQLVLAHDFPYPDLGFDGVEVPSIFQADRQKQQAIEFFSLS
KSYNMGGFRVGFAIGNAELIGALRRLKAVVDFNQYQGILAGAIAALTGPQACVEATRQRF
RDRRDIFINALAATGWTIPKPVSTMYLWAPLPEPWQTRSLEFCEKLVAETGVAASPGIGF
GDCGEGFVRFALVHDRDRLEEAARRITQFLAR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory