Comparing Synpcc7942_1893 FitnessBrowser__SynE:Synpcc7942_1893 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
38% identity, 96% coverage: 7:254/258 of query aligns to 4:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
38% identity, 96% coverage: 7:254/258 of query aligns to 4:253/254 of 1g6hA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
34% identity, 96% coverage: 8:254/258 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
34% identity, 96% coverage: 8:254/258 of query aligns to 3:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
34% identity, 96% coverage: 8:254/258 of query aligns to 3:235/235 of 6mhzA
6mbnA Lptb e163q in complex with atp (see paper)
34% identity, 97% coverage: 5:254/258 of query aligns to 1:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
34% identity, 95% coverage: 8:253/258 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
34% identity, 95% coverage: 8:253/258 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
34% identity, 95% coverage: 8:252/258 of query aligns to 3:233/233 of 6b8bA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
32% identity, 96% coverage: 7:254/258 of query aligns to 2:235/240 of 6mjpA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
30% identity, 97% coverage: 7:255/258 of query aligns to 6:239/240 of 1ji0A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 88% coverage: 15:242/258 of query aligns to 9:223/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
29% identity, 91% coverage: 7:242/258 of query aligns to 2:223/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 83% coverage: 20:232/258 of query aligns to 18:218/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 83% coverage: 20:232/258 of query aligns to 19:219/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
33% identity, 83% coverage: 20:232/258 of query aligns to 19:219/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 83% coverage: 20:232/258 of query aligns to 19:219/344 of 6cvlD
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 90% coverage: 7:238/258 of query aligns to 3:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
28% identity, 90% coverage: 7:238/258 of query aligns to 3:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
28% identity, 90% coverage: 7:238/258 of query aligns to 3:229/242 of 2olkA
>Synpcc7942_1893 FitnessBrowser__SynE:Synpcc7942_1893
LAAESWLLEAEGLSKRFGGLQAVQDVRLQVAEGTITGLIGPNGAGKSTLFALLSNFLKAD
AGKVRFRGRAIEKLQPYQLAQLGLVRTFQVARSLSRLTVLENMLLGGQQQRGEKFWQVWL
HPQAIRRQEQELRDRAFSLLSDVGLAAKAQDYAGSLSGGQRKLLEMARALMAQPQLVLLD
EPAAGVNPALIEKICDHIQTWNQQGISFLIIEHNMDVIMSLCDRVWVLAEGKNLVDGPPA
QIQQDEQVLAAYLGLELA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory