Comparing Synpcc7942_1961 FitnessBrowser__SynE:Synpcc7942_1961 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2fkoA Structure of ph1591 from pyrococcus horikoshii ot3 (see paper)
48% identity, 86% coverage: 11:167/182 of query aligns to 10:168/173 of 2fkoA
1v3wA Structure of ferripyochelin binding protein from pyrococcus horikoshii ot3 (see paper)
48% identity, 86% coverage: 11:167/182 of query aligns to 10:168/173 of 1v3wA
7zw9A Crystal structure of a gamma-carbonic anhydrase from the pathogenic bacterium burkholderia pseudomallei (see paper)
49% identity, 87% coverage: 12:169/182 of query aligns to 11:169/173 of 7zw9A
6iveA Molecular structure of a thermostable and a zinc ion binding gamma- class carbonic anhydrase (see paper)
49% identity, 90% coverage: 4:167/182 of query aligns to 5:161/168 of 6iveA
Q5KW03 Carbonic anhydrase; Gamma-carbonic anhydrase; Cag; EC 4.2.1.1 from Geobacillus kaustophilus (strain HTA426) (see paper)
41% identity, 90% coverage: 12:174/182 of query aligns to 10:174/182 of Q5KW03
3vnpA Crystal structure of hypothetical protein (gk2848) from geobacillus kaustophilus
41% identity, 87% coverage: 12:169/182 of query aligns to 11:170/171 of 3vnpA
4n27A X-ray structure of brucella abortus rica (see paper)
44% identity, 80% coverage: 15:159/182 of query aligns to 16:162/175 of 4n27A
3tioF Crystal structures of yrda from escherichia coli, a homologous protein of gamma-class carbonic anhydrase, show possible allosteric conformations (see paper)
39% identity, 86% coverage: 12:168/182 of query aligns to 11:176/177 of 3tioF
3r3rA Structure of the yrda ferripyochelin binding protein from salmonella enterica
41% identity, 87% coverage: 12:169/182 of query aligns to 16:182/184 of 3r3rA
8e73G2 qcr9 (see paper)
38% identity, 93% coverage: 12:180/182 of query aligns to 52:223/258 of 8e73G2
8bpxy Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (see paper)
37% identity, 93% coverage: 12:181/182 of query aligns to 53:230/265 of 8bpxy
Sites not aligning to the query:
8befy Cryo-em structure of the arabidopsis thaliana i+iii2 supercomplex (ci membrane core) (see paper)
37% identity, 93% coverage: 12:181/182 of query aligns to 53:230/265 of 8befy
Sites not aligning to the query:
7ar7y Cryo-em structure of arabidopsis thaliana complex-i (open conformation) (see paper)
37% identity, 93% coverage: 12:181/182 of query aligns to 52:229/268 of 7ar7y
Sites not aligning to the query:
7aqqy Cryo-em structure of arabidopsis thaliana complex-i (membrane core) (see paper)
37% identity, 93% coverage: 12:181/182 of query aligns to 52:229/268 of 7aqqy
7aqqz Cryo-em structure of arabidopsis thaliana complex-i (membrane core) (see paper)
39% identity, 87% coverage: 12:170/182 of query aligns to 52:218/233 of 7aqqz
Sites not aligning to the query:
7a23p Plant mitochondrial respiratory complex i (see paper)
39% identity, 87% coverage: 12:170/182 of query aligns to 48:214/224 of 7a23p
Sites not aligning to the query:
6sc4B Gamma-carbonic anhydrase from the haloarchaeon halobacterium sp. (see paper)
35% identity, 87% coverage: 11:168/182 of query aligns to 10:177/178 of 6sc4B
3ixcA Crystal structure of hexapeptide transferase family protein from anaplasma phagocytophilum
36% identity, 85% coverage: 12:165/182 of query aligns to 13:165/166 of 3ixcA
8gpmA Acinetobacter baumannii carbonic anhydrase
42% identity, 80% coverage: 19:163/182 of query aligns to 18:164/193 of 8gpmA
8gppA Acinetobacter baumannii carbonic anhydrase paay
42% identity, 80% coverage: 19:163/182 of query aligns to 17:163/189 of 8gppA
>Synpcc7942_1961 FitnessBrowser__SynE:Synpcc7942_1961
MAAFGDRTWGEPDCQRATYVAESAVICGDVVLAEGVSIWPTAVLRGDVERIEIGCNSNVQ
DGAVLHGDPGQPTILEEDVTVGHRAVIHSANIGAGSLIGIGAIVLNGVQIGAGSIVGAGA
VVTKSIPAGSLAMGVPAKVVRSLSAAEIADLRQHAQHYVALAEAHAQQQAGKTSEKRSES
AQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory