Comparing Synpcc7942_1995 FitnessBrowser__SynE:Synpcc7942_1995 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
6j2lA Crystal structure of bi-functional enzyme (see paper)
41% identity, 91% coverage: 19:209/211 of query aligns to 16:200/200 of 6j2lA
6j2lB Crystal structure of bi-functional enzyme (see paper)
36% identity, 91% coverage: 19:209/211 of query aligns to 15:185/185 of 6j2lB
7bgnA Crystal structure of mthisn2-amp complex, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
33% identity, 95% coverage: 10:209/211 of query aligns to 6:203/204 of 7bgnA
Sites not aligning to the query:
7bgmA Crystal structure of mthisn2, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
32% identity, 95% coverage: 10:209/211 of query aligns to 8:212/213 of 7bgmA
>Synpcc7942_1995 FitnessBrowser__SynE:Synpcc7942_1995
MAPLSLSLPLDQLRFDERGLLPAIAQDYLDGTVLMLAWMNREALEKTLETGEVWYWSRSR
QELWHKGATSGHFQKLQAIRYDCDSDALLLTIEQIGDIACHTGERSCFHRDVDVVTPPPA
DILTEVYRVVCDRRDRPSEASYTSKLFAGGDNKILKKIGEEAAEVVMACKDDDADGLAGE
AADLFFHTLVALAQHNVDLRSVYRKLQERRR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory