Comparing Synpcc7942_2243 FitnessBrowser__SynE:Synpcc7942_2243 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
7wxiA Gpr domain of drosophila p5cs filament with glutamate and atpgammas (see paper)
27% identity, 99% coverage: 4:411/414 of query aligns to 1:406/430 of 7wxiA
7wxgA Gpr domain closed form of drosophila p5cs filament with glutamate, atp, and NADPH (see paper)
27% identity, 99% coverage: 4:411/414 of query aligns to 1:406/430 of 7wxgA
4jbeB 1.95 angstrom crystal structure of gamma-glutamyl phosphate reductase from saccharomonospora viridis.
23% identity, 87% coverage: 12:372/414 of query aligns to 15:369/412 of 4jbeB
>Synpcc7942_2243 FitnessBrowser__SynE:Synpcc7942_2243
MAAPARAFVYQAYQAANQLARTKPLVRSQALQAIAQAIDSARDDILEANTLDLEACQDSE
MPDLLRRWLKLTPERLDRTVEILERLSVRSDPIQQVMRASFQHEHSQAYSQLMPLGVIAF
VYEALPELAAIATGLCLRVGNSILLKGGTEAVHTNQAIVSVMQEALESTELPTTSLILLP
EDDPATSLAALVTQDQWIDLVIPYGRPELVQQVARLATSPVLRTSMGNCYLYWASGGELE
TVRWMILDSHASEPDAVNAIEKVLIDRDCNLSKLTVLMDSLRSKGFRLKGDEELVQEMPE
LELARHEDWSRPYLSRTVAFKLVPGIEAATDWINTHSSGHADSIVTDSYEDSRAFSRELN
SAMVHVNASPRFSRSPRHSNEIALGMSNQKGYRRGRITLETLTTIKQVVLGLGQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory