Comparing Synpcc7942_2308 FitnessBrowser__SynE:Synpcc7942_2308 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1worA Crystal structure of t-protein of the glycine cleavage system (see paper)
44% identity, 97% coverage: 12:372/372 of query aligns to 4:362/362 of 1worA
1wopA Crystal structure of t-protein of the glycine cleavage system (see paper)
44% identity, 97% coverage: 12:372/372 of query aligns to 4:362/362 of 1wopA
1wooA Crystal structure of t-protein of the glycine cleavage system (see paper)
44% identity, 97% coverage: 12:372/372 of query aligns to 4:362/362 of 1wooA
3a8iA Crystal structure of et-ehred-5-ch3-thf complex (see paper)
41% identity, 97% coverage: 12:370/372 of query aligns to 4:360/363 of 3a8iA
P48728 Aminomethyltransferase, mitochondrial; Glycine cleavage system T protein; GCVT; EC 2.1.2.10 from Homo sapiens (Human) (see 4 papers)
36% identity, 96% coverage: 9:365/372 of query aligns to 33:394/403 of P48728
Sites not aligning to the query:
1wsvA Crystal structure of human t-protein of glycine cleavage system (see paper)
36% identity, 96% coverage: 9:365/372 of query aligns to 2:363/371 of 1wsvA
Sites not aligning to the query:
Q9UI17 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Homo sapiens (Human) (see 4 papers)
31% identity, 97% coverage: 4:365/372 of query aligns to 468:847/866 of Q9UI17
Sites not aligning to the query:
4pabB Crystal structure of the precursor form of rat dmgdh complexed with tetrahydrofolate (see paper)
31% identity, 97% coverage: 4:365/372 of query aligns to 424:803/824 of 4pabB
Sites not aligning to the query:
Q63342 Dimethylglycine dehydrogenase, mitochondrial; ME2GLYDH; EC 1.5.8.4 from Rattus norvegicus (Rat) (see 2 papers)
31% identity, 97% coverage: 4:365/372 of query aligns to 461:840/857 of Q63342
Sites not aligning to the query:
Q8GAI3 4-methylaminobutanoate oxidase (formaldehyde-forming); MABO; Demethylating gamma-N-methylaminobutyrate oxidase; Gamma-N-methylaminobutyrate oxidase 1; EC 1.5.3.19 from Paenarthrobacter nicotinovorans (Arthrobacter nicotinovorans) (see paper)
28% identity, 91% coverage: 34:372/372 of query aligns to 481:823/824 of Q8GAI3
Sites not aligning to the query:
1pj7A Structure of dimethylglycine oxidase of arthrobacter globiformis in complex with folinic acid (see paper)
26% identity, 97% coverage: 8:366/372 of query aligns to 426:818/827 of 1pj7A
Sites not aligning to the query:
1pj6A Crystal structure of dimethylglycine oxidase of arthrobacter globiformis in complex with folic acid (see paper)
26% identity, 97% coverage: 8:366/372 of query aligns to 427:819/828 of 1pj6A
Sites not aligning to the query:
Q9AGP8 Dimethylglycine oxidase; DMGO; EC 1.5.3.10 from Arthrobacter globiformis (see 2 papers)
26% identity, 97% coverage: 8:366/372 of query aligns to 429:821/830 of Q9AGP8
Sites not aligning to the query:
3gsiA Crystal structure of d552a dimethylglycine oxidase mutant of arthrobacter globiformis in complex with tetrahydrofolate (see paper)
26% identity, 97% coverage: 8:366/372 of query aligns to 426:818/827 of 3gsiA
Sites not aligning to the query:
Q46337 Sarcosine oxidase subunit alpha; Sarcosine oxidase subunit A; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit alpha; Tetrameric sarcosine oxidase subunit alpha; TSOX subunit alpha; EC 1.5.3.24 from Corynebacterium sp. (strain P-1) (see 2 papers)
26% identity, 94% coverage: 12:360/372 of query aligns to 579:952/967 of Q46337
Sites not aligning to the query:
3tfjA Dmsp-dependent demethylase from p. Ubique - with cofactor thf (see paper)
23% identity, 96% coverage: 9:365/372 of query aligns to 12:368/369 of 3tfjA
3tfiA Dmsp-dependent demethylase from p. Ubique - with substrate dmsp (see paper)
23% identity, 96% coverage: 9:365/372 of query aligns to 12:368/369 of 3tfiA
Q4FP21 Dimethylsulfonioproprionate demethylase DmdA; EC 2.1.1.269 from Pelagibacter ubique (strain HTCC1062) (see paper)
23% identity, 96% coverage: 9:365/372 of query aligns to 12:368/369 of Q4FP21
2gagA Heteroteterameric sarcosine: structure of a diflavin metaloenzyme at 1.85 a resolution (see paper)
26% identity, 95% coverage: 12:366/372 of query aligns to 577:956/965 of 2gagA
Sites not aligning to the query:
Q50LF0 Sarcosine oxidase subunit alpha; Sarcosine oxidase subunit A; Sarcosine oxidase (5,10-methylenetetrahydrofolate-forming) subunit alpha; Tetrameric sarcosine oxidase subunit alpha; TSOX subunit alpha; EC 1.5.3.24 from Corynebacterium sp. (strain U-96) (see 2 papers)
25% identity, 94% coverage: 12:360/372 of query aligns to 577:950/965 of Q50LF0
Sites not aligning to the query:
>Synpcc7942_2308 FitnessBrowser__SynE:Synpcc7942_2308
VTLTVTVSLLSSPLHSVCTSAGARFTGFAGWELPLQFQGLMQEHLAVRERAGLFDISHMG
KFQLRGSGLRAALQRLLPSDLTTLLPGQAQYSVLLNEAGGCLDDLIVYWQGIVDGVEQAF
LIVNAATTDSDRLWLTEHLPPAIALLDLSQDLALVAIQGPQAIAFLQPLVSCDLAELPRF
SHTVTSIAGQPAFVARTGYTGEDGCEVMLPPAAAITLWQQLTAAGVVPCGLGARDTLRLE
AAMPLYGHELDTDTNPLEAGLGWVVHLDRNPDFLGRDRLVQAKTNGLERRLVGLELPGRN
IARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATV
VKRPFYRGSQFR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory