Comparing Synpcc7942_2492 Synpcc7942_2492 ATPase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
54% identity, 100% coverage: 1:237/237 of query aligns to 2:238/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 98% coverage: 5:237/237 of query aligns to 2:235/240 of 6mjpA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 98% coverage: 5:237/237 of query aligns to 4:253/254 of 1g6hA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
35% identity, 98% coverage: 6:237/237 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
35% identity, 98% coverage: 6:237/237 of query aligns to 3:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
35% identity, 98% coverage: 6:237/237 of query aligns to 3:235/235 of 6mhzA
6mbnA Lptb e163q in complex with atp (see paper)
34% identity, 98% coverage: 6:237/237 of query aligns to 4:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
34% identity, 97% coverage: 6:236/237 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
34% identity, 97% coverage: 6:236/237 of query aligns to 3:234/234 of 4p31A
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
27% identity, 98% coverage: 5:237/237 of query aligns to 4:253/253 of 1g9xB
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
34% identity, 97% coverage: 6:235/237 of query aligns to 3:233/233 of 6b8bA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 96% coverage: 4:230/237 of query aligns to 1:228/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
28% identity, 94% coverage: 5:226/237 of query aligns to 1:224/240 of 4ymuJ
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 96% coverage: 4:230/237 of query aligns to 16:240/378 of P69874
Sites not aligning to the query:
Q5SSE9 ATP-binding cassette sub-family A member 13; EC 7.6.2.- from Mus musculus (Mouse) (see paper)
32% identity, 87% coverage: 19:225/237 of query aligns to 3824:4029/5034 of Q5SSE9
Sites not aligning to the query:
7qkrA Cryo-em structure of abc transporter ste6-2p from pichia pastoris with verapamil at 3.2 a resolution (see paper)
34% identity, 87% coverage: 21:226/237 of query aligns to 978:1182/1199 of 7qkrA
Sites not aligning to the query:
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
27% identity, 97% coverage: 3:232/237 of query aligns to 2:235/501 of P04983
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
26% identity, 94% coverage: 3:225/237 of query aligns to 2:223/285 of 4yerA
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
29% identity, 95% coverage: 6:229/237 of query aligns to 4:225/369 of P19566
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
29% identity, 93% coverage: 9:229/237 of query aligns to 30:254/382 of 7ahhC
Sites not aligning to the query:
>Synpcc7942_2492 Synpcc7942_2492 ATPase
MSEPLLQLSQIAVNYGAVVALTDLTLEIFPGEIVALIGANGAGKSTTLRAISRLVPLQQG
RIYYDQQDLGLIPAPQLVGRGLAHCPEGRRVLARQSVRINLELGAYCRRDRIGIQTDLEL
QFDRFPRLRERQNQPAGTLSGGEQQMLAIARALMSRPRLLLLDEPSLGLAPQIVQEIFSV
IRSLREQGMTILLVEQNATLALQTADRGYVLEAGQLLFSGPAADLLIDPRVKQAYLG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory