SitesBLAST
Comparing WP_000575508.1 NCBI__GCF_000382825.1:WP_000575508.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
4wxgA Crystal structure of l-serine hydroxymethyltransferase in complex with a mixture of l-threonine and glycine (see paper)
81% identity, 98% coverage: 7:416/418 of query aligns to 1:410/410 of 4wxgA
- active site: T43 (≠ S49), L45 (= L51), G189 (= G195), A215 (= A221), T218 (= T224), R230 (= R236)
- binding N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-threonine: S29 (= S35), Y49 (= Y55), E51 (= E57), Y59 (= Y65), S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), S170 (= S176), D195 (= D201), A197 (= A203), H198 (= H204), T221 (= T227), K224 (= K230), G255 (= G261), R357 (= R363)
4wxfA Crystal structure of l-serine hydroxymethyltransferase in complex with glycine (see paper)
81% identity, 98% coverage: 7:416/418 of query aligns to 1:410/410 of 4wxfA
- active site: T43 (≠ S49), L45 (= L51), G189 (= G195), A215 (= A221), T218 (= T224), R230 (= R236)
- binding n-glycine-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-yl-methane]: S29 (= S35), Y49 (= Y55), Y59 (= Y65), S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), S170 (= S176), D195 (= D201), A197 (= A203), H198 (= H204), H223 (= H229), K224 (= K230), G255 (= G261), R357 (= R363)
6ti4A Shmt from streptococcus thermophilus tyr55ser variant in complex with plp/d-serine/lys230 gem diamine complex
80% identity, 98% coverage: 7:416/418 of query aligns to 1:410/410 of 6ti4A
- active site: S49 (≠ Y55), E51 (= E57), D195 (= D201), T221 (= T227), K224 (= K230), R230 (= R236)
- binding magnesium ion: A50 (= A56), E51 (= E57), Y58 (= Y64), Y59 (= Y65)
- binding (2~{R})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-propanoic acid: E51 (= E57), Y59 (= Y65), S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), S170 (= S176), D195 (= D201), A197 (= A203), H198 (= H204), K224 (= K230), G255 (= G261), R357 (= R363)
6ti3A Apo-shmt from streptococcus thermophilus tyr55ser variant in complex with d-threonine
80% identity, 98% coverage: 7:416/418 of query aligns to 1:410/410 of 6ti3A
- active site: S49 (≠ Y55), E51 (= E57), D195 (= D201), T221 (= T227), K224 (= K230), R230 (= R236)
- binding d-threonine: S91 (= S97), G92 (= G98), S93 (= S99), H223 (= H229), G255 (= G261), G256 (= G262)
6tghC Shmt from streptococcus thermophilus tyr55thr variant in complex with d-serine both as external aldimine and as non-covalent complex
80% identity, 98% coverage: 7:416/418 of query aligns to 1:410/410 of 6tghC
- active site: T49 (≠ Y55), E51 (= E57), D195 (= D201), T221 (= T227), K224 (= K230), R230 (= R236)
- binding d-serine: S29 (= S35), H198 (= H204), R357 (= R363)
- binding L-Serine, N-[[3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]-4-pyridinyl]methylene]: E51 (= E57), G255 (= G261)
- binding pyridoxal-5'-phosphate: S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), D195 (= D201), A197 (= A203), H198 (= H204), T221 (= T227), K224 (= K230)
6tghA Shmt from streptococcus thermophilus tyr55thr variant in complex with d-serine both as external aldimine and as non-covalent complex
80% identity, 98% coverage: 7:416/418 of query aligns to 1:410/410 of 6tghA
- active site: T49 (≠ Y55), E51 (= E57), D195 (= D201), T221 (= T227), K224 (= K230), R230 (= R236)
- binding d-serine: E51 (= E57), Y59 (= Y65)
- binding L-Serine, N-[[3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]-4-pyridinyl]methylene]: S29 (= S35), S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), S170 (= S176), D195 (= D201), A197 (= A203), H198 (= H204), K224 (= K230), R357 (= R363)
7x5oB Crystal structure of e. Faecium shmt in complex with me-thf and plp- gly (see paper)
72% identity, 98% coverage: 7:417/418 of query aligns to 2:412/412 of 7x5oB
- binding n-glycine-[3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-yl-methane]: S30 (= S35), Y50 (= Y55), Y60 (= Y65), S92 (= S97), G93 (= G98), S94 (= S99), H121 (= H126), S171 (= S176), D196 (= D201), A198 (= A203), H199 (= H204), K225 (= K230), R358 (= R363)
- binding n-[4-({[(6s)-2-amino-4-hydroxy-5-methyl-5,6,7,8-tetrahydropteridin-6-yl]methyl}amino)benzoyl]-l-glutamic acid: E52 (= E57), Y59 (= Y64), L116 (= L121), G119 (= G124), G120 (= G125), H121 (= H126), S171 (= S176), P252 (= P257), N342 (= N347), P351 (= P356)
9j4gA Serine hydroxymethyltransferase (see paper)
72% identity, 98% coverage: 7:416/418 of query aligns to 2:411/411 of 9j4gA
- binding (+)-shin-2: E52 (= E57), Y59 (= Y64), L116 (= L121), G120 (= G125), H121 (= H126), L122 (= L127), K341 (= K346), N342 (= N347), S343 (= S348), P351 (= P356)
- binding [3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-serine: S30 (= S35), Y50 (= Y55), E52 (= E57), S92 (= S97), G93 (= G98), S94 (= S99), H121 (= H126), S171 (= S176), D196 (= D201), A198 (= A203), H199 (= H204), K225 (= K230), G256 (= G261), R358 (= R363)
7x5nA Crystal structure of e. Faecium shmt in complex with (+)-shin-1 and plp-ser (see paper)
73% identity, 98% coverage: 7:415/418 of query aligns to 1:409/409 of 7x5nA
- binding (4R)-6-azanyl-4-[3-(hydroxymethyl)-5-phenyl-phenyl]-3-methyl-4-propan-2-yl-1H-pyrano[2,3-c]pyrazole-5-carbonitrile: E51 (= E57), Y58 (= Y64), Y59 (= Y65), L115 (= L121), G119 (= G125), H120 (= H126), L121 (= L127), K340 (= K346), N341 (= N347), S342 (= S348), P350 (= P356), F351 (= F357), R357 (= R363)
- binding [3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-serine: S29 (= S35), Y49 (= Y55), E51 (= E57), Y59 (= Y65), S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), S170 (= S176), D195 (= D201), A197 (= A203), H198 (= H204), K224 (= K230), R357 (= R363)
7v3dA Complex structure of serine hydroxymethyltransferase from enterococcus faecium and its inhibitor (see paper)
73% identity, 98% coverage: 7:415/418 of query aligns to 1:409/409 of 7v3dA
- binding (4R)-6-azanyl-4-[3-(hydroxymethyl)-5-phenyl-phenyl]-3-methyl-4-propan-2-yl-1H-pyrano[2,3-c]pyrazole-5-carbonitrile: E51 (= E57), Y58 (= Y64), L115 (= L121), G119 (= G125), H120 (= H126), L121 (= L127), K340 (= K346), S342 (= S348), P350 (= P356), F351 (= F357), R357 (= R363)
- binding pyridoxal-5'-phosphate: Y49 (= Y55), S91 (= S97), G92 (= G98), S93 (= S99), H120 (= H126), S170 (= S176), D195 (= D201), A197 (= A203), K224 (= K230), G255 (= G261)
1kl2A Crystal structure of serine hydroxymethyltransferase complexed with glycine and 5-formyl tetrahydrofolate (see paper)
64% identity, 96% coverage: 12:411/418 of query aligns to 8:405/405 of 1kl2A
- active site: Y51 (= Y55), E53 (= E57), D197 (= D201), T223 (= T227), K226 (= K230), R232 (= R236)
- binding N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid: E53 (= E57), Y60 (= Y64), G121 (= G125), H122 (= H126), S172 (= S176), F251 (= F256), N341 (= N347)
- binding glycine: S31 (= S35), Y51 (= Y55), Y61 (= Y65), H200 (= H204), R357 (= R363)
- binding pyridoxal-5'-phosphate: S93 (= S97), G94 (= G98), A95 (≠ S99), H122 (= H126), S172 (= S176), D197 (= D201), A199 (= A203), H200 (= H204), T223 (= T227), H225 (= H229), K226 (= K230)
1kl1A Crystal structure of serine hydroxymethyltransferase complexed with glycine (see paper)
64% identity, 96% coverage: 12:411/418 of query aligns to 8:405/405 of 1kl1A
- active site: Y51 (= Y55), E53 (= E57), D197 (= D201), T223 (= T227), K226 (= K230), R232 (= R236)
- binding glycine: S31 (= S35), H122 (= H126), R357 (= R363)
- binding pyridoxal-5'-phosphate: S93 (= S97), G94 (= G98), A95 (≠ S99), H122 (= H126), A171 (= A175), S172 (= S176), D197 (= D201), A199 (= A203), H200 (= H204), T223 (= T227), H225 (= H229), K226 (= K230)
1kkpA Crystal structure of serine hydroxymethyltransferase complexed with serine (see paper)
64% identity, 96% coverage: 12:411/418 of query aligns to 8:405/405 of 1kkpA
- active site: Y51 (= Y55), E53 (= E57), D197 (= D201), T223 (= T227), K226 (= K230), R232 (= R236)
- binding pyridoxal-5'-phosphate: S93 (= S97), G94 (= G98), A95 (≠ S99), H122 (= H126), S172 (= S176), D197 (= D201), A199 (= A203), H200 (= H204), K226 (= K230)
- binding serine: S31 (= S35), H122 (= H126), R357 (= R363)
1kkjA Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus (see paper)
64% identity, 96% coverage: 12:411/418 of query aligns to 8:405/405 of 1kkjA
- active site: Y51 (= Y55), E53 (= E57), D197 (= D201), T223 (= T227), K226 (= K230), R232 (= R236)
- binding pyridoxal-5'-phosphate: S93 (= S97), G94 (= G98), A95 (≠ S99), H122 (= H126), S172 (= S176), D197 (= D201), A199 (= A203), H200 (= H204), T223 (= T227), H225 (= H229), K226 (= K230)
2vmyA Crystal structure of f351gbsshmt in complex with gly and fthf (see paper)
64% identity, 96% coverage: 12:411/418 of query aligns to 8:405/405 of 2vmyA
- active site: Y51 (= Y55), E53 (= E57), D197 (= D201), T223 (= T227), K226 (= K230), R232 (= R236)
- binding N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid: E53 (= E57), Y60 (= Y64), Y61 (= Y65), L117 (= L121), G121 (= G125), H122 (= H126), L123 (= L127), S172 (= S176), K248 (≠ S253), F251 (= F256), N341 (= N347), S349 (= S355), P350 (= P356), G351 (≠ F357), R357 (= R363)
- binding glycine: S31 (= S35), Y51 (= Y55), Y61 (= Y65), H200 (= H204), K226 (= K230), R357 (= R363)
- binding pyridoxal-5'-phosphate: Y51 (= Y55), S93 (= S97), G94 (= G98), A95 (≠ S99), H122 (= H126), S172 (= S176), D197 (= D201), A199 (= A203), H200 (= H204), T223 (= T227), K226 (= K230), G257 (= G262)
2vmxA Crystal structure of f351gbsshmt in complex with l-allo-thr (see paper)
64% identity, 96% coverage: 12:411/418 of query aligns to 8:405/405 of 2vmxA
- active site: Y51 (= Y55), E53 (= E57), D197 (= D201), T223 (= T227), K226 (= K230), R232 (= R236)
- binding allo-threonine: S31 (= S35), H122 (= H126), H200 (= H204), R357 (= R363)
- binding pyridoxal-5'-phosphate: S93 (= S97), G94 (= G98), A95 (≠ S99), H122 (= H126), S172 (= S176), D197 (= D201), A199 (= A203), H200 (= H204), T223 (= T227), K226 (= K230)
9bowA X-ray structure of thermus thermophilus serine hydroxymethyltransferase with plp-l-ser external aldimine and 5- formyltetrahydrofolate (folinic acid) (see paper)
64% identity, 94% coverage: 12:403/418 of query aligns to 3:393/402 of 9bowA
- binding N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid: E48 (= E57), Y55 (= Y64), F247 (= F256)
- binding (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine: Y46 (= Y55), E48 (= E57), Y56 (= Y65), G252 (= G261)
- binding serine: S26 (= S35), H195 (= H204), K221 (= K230), R353 (= R363)
9bohA Serine hydroxymethyltransferase (see paper)
64% identity, 94% coverage: 12:403/418 of query aligns to 3:393/402 of 9bohA
8suiB Joint x-ray/neutron structure of thermus thermophilus serine hydroxymethyltransferase (tthshmt) in internal aldimine state with l- ser bound in a pre-michalis complex (see paper)
64% identity, 94% coverage: 12:403/418 of query aligns to 3:393/402 of 8suiB
8ssyA Room-temperature x-ray structure of thermus thermophilus serine hydroxymethyltransferase (shmt) bound with d-ser in a pseudo- michaelis complex (see paper)
64% identity, 94% coverage: 12:403/418 of query aligns to 3:393/402 of 8ssyA
Query Sequence
>WP_000575508.1 NCBI__GCF_000382825.1:WP_000575508.1
MIFDKDDFKAYDADLWNAIAKEEERQQNNIELIASENVVSKAVMAAQGSILTNKYAEGYP
GRRYYGGTDVVDVVETLAIERAKEIFGAKFANVQPHSGSQANCAAYMALIEPGDTVMGMD
LAAGGHLTHGAPVSFSGQTYNFVSYSVDPETELLDFDAILKQAQEVKPKLIVAGASAYSQ
IIDFSKFREIADAVGAKLMVDMAHIAGLVAAGLHPSPVPYAHITTTTTHKTLRGPRGGLI
LTNDEELAKKINSAIFPGIQGGPLEHVVAAKAVSFKEVLDPAFKEYAANVIKNSKAMVEV
FLQDPDFRIISGGTENHLFLVDVTKVVENGKVAQNLLDEVNITLNKNSIPYETLSPFKTS
GIRIGSAAITARGFGEEESRKVAELIIKTLKNAENEAVLEEVRSEVKALTDAFPLYED
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory