Comparing WP_002719447.1 NCBI__GCF_000015985.1:WP_002719447.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
4wjiA Crystal structure of cyclohexadienyl dehydrogenase from sinorhizobium meliloti in complex with NADP and tyrosine
65% identity, 93% coverage: 4:293/311 of query aligns to 4:293/293 of 4wjiA
3gggD The crystal structure of a. Aeolicus prephenate dehydrogenase in complex with tyrosine and NAD+ (see paper)
34% identity, 91% coverage: 5:286/311 of query aligns to 14:293/293 of 3gggD
3ggoA Crystal structure of prephenate dehydrogenase from a. Aeolicus with hpp and nadh (see paper)
34% identity, 91% coverage: 5:286/311 of query aligns to 6:285/285 of 3ggoA
3ggpA Crystal structure of prephenate dehydrogenase from a. Aeolicus in complex with hydroxyphenyl propionate and NAD+ (see paper)
34% identity, 91% coverage: 5:286/311 of query aligns to 6:285/286 of 3ggpA
3b1fA Crystal structure of prephenate dehydrogenase from streptococcus mutans (see paper)
33% identity, 92% coverage: 2:286/311 of query aligns to 3:285/286 of 3b1fA
5uyyA Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with l-tyrosine (see paper)
32% identity, 93% coverage: 5:292/311 of query aligns to 10:303/373 of 5uyyA
Sites not aligning to the query:
6u60B Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with NAD and l-tyrosine (see paper)
32% identity, 93% coverage: 5:292/311 of query aligns to 2:295/365 of 6u60B
Sites not aligning to the query:
2f1kA Crystal structure of synechocystis arogenate dehydrogenase (see paper)
30% identity, 91% coverage: 6:288/311 of query aligns to 2:279/279 of 2f1kA
5t57A Crystal structure of a semialdehyde dehydrogenase NAD-binding protein from cupriavidus necator in complex with calcium and NAD
30% identity, 42% coverage: 3:134/311 of query aligns to 1:129/276 of 5t57A
Sites not aligning to the query:
F8GV06 D-apionate oxidoisomerase; EC 1.1.1.421 from Cupriavidus necator (strain ATCC 43291 / DSM 13513 / CCUG 52238 / LMG 8453 / N-1) (Ralstonia eutropha)
30% identity, 42% coverage: 3:134/311 of query aligns to 1:129/276 of F8GV06
Sites not aligning to the query:
>WP_002719447.1 NCBI__GCF_000015985.1:WP_002719447.1
MALYERVALIGLGLIASSMAHAIRAAGLATEITGHARSAETRAAAVEIGLCDRVFETAAE
AVAGADLVVLAVPVGAMGAIAAEIAPHLAPGATVTDVGSVKQAVITAVAPHVPEGVHFVP
GHPLAGTEHSGPRSGFATLFRNRWWLLTPPEGADPEAVARLRALCEGMGANVEEMDAAHH
DLVLAVTSHTPHLIAYTMVGVADHLRRVTQSEIIRYSAAGFRDFTRIAASDPTMWRDVFL
TNKEATLDILGRFTEELFALQRAIRLGDGDHLFEYFTRTRAIRRGIIEAGQDTAAPDFGR
AAEAGKGTEKG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory