SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_002720537.1 NCBI__GCF_000015985.1:WP_002720537.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
26% identity, 49% coverage: 133:276/293 of query aligns to 80:214/215 of 4ymtC

query
sites
4ymtC
Q
 
Q
I
 
F
W
 
G
H
 
M
Q
 
N
I
 
I
Y
 
P
G
 
A
F
 
F
A
 
T
L
 
A
A
 
G
V
 
V
A
 
S
T
 
A
F
 
L
A
 
A
I
 
I
V
x
N
F
 
S
G
 
S
A
 
A
F
x
Y
V
 
V
S
 
A
N
 
E
V
 
I
L
 
I
T
 
R
G
 
A
A
 
G
M
 
I
N
 
Q
A
 
A
V
 
V
P
 
D
K
 
P
A
 
G
Q
 
Q
L
 
N
E
 
E
T
 
A
A
 
A
E
 
R
S
 
S
Y
 
L
G
 
G
M
 
M
S
 
T
H
 
H
G
 
A
Q
 
M
V
 
A
F
 
M
R
 
R
R
 
Y
I
 
V
L
 
I
V
 
I
P
 
P
Q
 
Q
M
 
A
W
 
I
I
 
K
Y
 
N
A
 
I
L
 
L
P
 
P
G
 
A
L
 
L
S
 
G
N
 
N
L
x
E
W
 
F
M
 
I
I
 
V
L
x
M
I
 
L
K
|
K
A
x
E
T
 
S
P
 
A
L
 
I
L
 
V
F
 
S
L
 
V
L
 
I
G
 
G
V
 
F
Q
 
A
D
 
D
I
 
L
V
 
-
Y
 
-
W
 
-
A
 
T
R
 
R
E
 
Q
L
 
A
G
 
D
G
 
I
T
 
I
K
 
Q
T
 
S
S
 
V
L
 
T
Y
 
Y
A
 
R
Y
 
Y
P
 
F
H
 
E
P
 
P
D
 
-
W
 
-
R
 
-
L
 
-
Y
 
-
Y
 
-
F
 
Y
L
 
I
A
 
I
L
 
I
L
 
A
V
 
A
F
 
I
Y
 
Y
L
 
F
G
 
V
M
 
M
T
 
T
R
 
L
V
 
T
S
 
F
E
 
S
I
 
K
V
 
L
L
 
L
G
 
S
R
 
L
L
 
F
T
 
E
R
 
R
R
 
R
L
 
L

Sites not aligning to the query:

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
26% identity, 49% coverage: 133:276/293 of query aligns to 80:214/214 of 4ymwC

query
sites
4ymwC
Q
 
Q
I
 
F
W
 
G
H
 
M
Q
 
N
I
 
I
Y
 
P
G
 
A
F
 
F
A
 
T
L
 
A
A
 
G
V
 
V
A
 
S
T
 
A
F
 
L
A
 
A
I
 
I
V
x
N
F
 
S
G
 
S
A
 
A
F
x
Y
V
 
V
S
 
A
N
 
E
V
 
I
L
 
I
T
 
R
G
 
A
A
 
G
M
 
I
N
 
Q
A
 
A
V
 
V
P
 
D
K
 
P
A
 
G
Q
 
Q
L
 
N
E
 
E
T
 
A
A
 
A
E
 
R
S
 
S
Y
 
L
G
 
G
M
 
M
S
 
T
H
 
H
G
 
A
Q
 
M
V
 
A
F
 
M
R
 
R
R
 
Y
I
 
V
L
 
I
V
 
I
P
 
P
Q
 
Q
M
 
A
W
 
I
I
 
K
Y
 
N
A
 
I
L
 
L
P
 
P
G
 
A
L
 
L
S
 
G
N
 
N
L
x
E
W
 
F
M
 
I
I
 
V
L
 
M
I
 
L
K
 
K
A
x
E
T
 
S
P
 
A
L
 
I
L
 
V
F
 
S
L
 
V
L
 
I
G
 
G
V
 
F
Q
 
A
D
 
D
I
 
L
V
 
-
Y
 
-
W
 
-
A
 
T
R
 
R
E
 
Q
L
 
A
G
 
D
G
 
I
T
 
I
K
 
Q
T
 
S
S
 
V
L
 
T
Y
 
Y
A
 
R
Y
 
Y
P
 
F
H
 
E
P
 
P
D
 
-
W
 
-
R
 
-
L
 
-
Y
 
-
Y
 
-
F
 
Y
L
 
I
A
 
I
L
 
I
L
 
A
V
 
A
F
 
I
Y
 
Y
L
 
F
G
 
V
M
 
M
T
 
T
R
 
L
V
 
T
S
 
F
E
 
S
I
 
K
V
 
L
L
 
L
G
 
S
R
 
L
L
 
F
T
 
E
R
 
R
R
 
R
L
 
L

Query Sequence

>WP_002720537.1 NCBI__GCF_000015985.1:WP_002720537.1
MFASCADPNSLEGLSWLLCYLTSGSHIAFYWSFVTVLVLLAVTAPAALAFGFAGAVAARS
PLWPLSVAGRTYTAMVRGVPDIVFFLFFVIALDQGIEWVVHQVRCPDWTEPVRQGLEFRV
CPAAKVPPGNAPQIWHQIYGFALAVATFAIVFGAFVSNVLTGAMNAVPKAQLETAESYGM
SHGQVFRRILVPQMWIYALPGLSNLWMILIKATPLLFLLGVQDIVYWARELGGTKTSLYA
YPHPDWRLYYFLALLVFYLGMTRVSEIVLGRLTRRLSFGQATAGGEAQRKAAT

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory