SitesBLAST
Comparing WP_002721933.1 NCBI__GCF_000015985.1:WP_002721933.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
41% identity, 96% coverage: 3:513/531 of query aligns to 2:509/526 of 3dc2A
- active site: N96 (= N100), R230 (= R234), D254 (= D258), E259 (= E263), H277 (= H281)
- binding serine: Y458 (≠ N461), D460 (= D463), R461 (≠ V464), P462 (= P465), G463 (= G466), A464 (≠ I467), L465 (≠ I468), L484 (= L487)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
41% identity, 96% coverage: 3:513/531 of query aligns to 3:508/525 of 3ddnB
O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
42% identity, 75% coverage: 4:403/531 of query aligns to 8:407/533 of O43175
- T78 (≠ I76) binding NAD(+)
- R135 (≠ K133) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
- RI 155:156 (≠ NI 153:154) binding NAD(+)
- D175 (= D173) binding NAD(+)
- T207 (≠ V205) binding NAD(+)
- CAR 234:236 (= CAR 232:234) binding NAD(+)
- D260 (= D258) binding NAD(+)
- V261 (= V259) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
- HLGA 283:286 (= HLGA 281:284) binding NAD(+)
- A373 (= A371) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
- G377 (= G375) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
- 425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
- 490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
47% identity, 57% coverage: 4:305/531 of query aligns to 3:302/303 of 6plgA
6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
47% identity, 57% coverage: 4:305/531 of query aligns to 4:303/305 of 6plfA
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
47% identity, 57% coverage: 4:305/531 of query aligns to 3:302/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ I149), G147 (= G150), L148 (≠ A151), G149 (= G152), R150 (≠ N153), I151 (= I154), G152 (= G155), D170 (= D173), H201 (= H204), T202 (≠ V205), P203 (= P206)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
47% identity, 57% coverage: 4:305/531 of query aligns to 3:302/302 of 6rihA
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
47% identity, 56% coverage: 4:303/531 of query aligns to 3:300/301 of 6rj5A
7dkmA Phgdh covalently linked to oridonin (see paper)
47% identity, 57% coverage: 4:305/531 of query aligns to 4:303/306 of 7dkmA
- binding nicotinamide-adenine-dinucleotide: T74 (≠ I76), A102 (≠ T104), G148 (= G150), R151 (≠ N153), I152 (= I154), Y170 (= Y172), D171 (= D173), P172 (= P174), I173 (≠ F175), H202 (= H204), T203 (≠ V205), P204 (= P206), T209 (= T211), C230 (= C232), A231 (= A233), R232 (= R234), H279 (= H281), G281 (= G283)
- binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (≠ T14), K17 (≠ Q17), I18 (= I18), E293 (≠ L295)
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
47% identity, 56% coverage: 4:303/531 of query aligns to 2:299/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N100), A100 (≠ T104), R149 (≠ N153), I150 (= I154), Y168 (= Y172), D169 (= D173), P170 (= P174), I171 (≠ F175), H200 (= H204), T201 (≠ V205), P202 (= P206), T207 (= T211), C228 (= C232), A229 (= A233), R230 (= R234), H277 (= H281), G279 (= G283)
6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
47% identity, 57% coverage: 5:305/531 of query aligns to 1:299/299 of 6rj2A
- binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G152), I148 (= I154), Y166 (= Y172), D167 (= D173), P168 (= P174), I169 (≠ F175), I170 (≠ L176), H198 (= H204), T199 (≠ V205), L208 (≠ I214), R228 (= R234)
6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
47% identity, 56% coverage: 4:301/531 of query aligns to 2:297/297 of 6rj3A
6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
46% identity, 56% coverage: 4:303/531 of query aligns to 2:291/292 of 6plfB
- binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (≠ N153), Y160 (= Y172), D161 (= D173), P162 (= P174), I164 (≠ L176), L179 (= L191), T193 (≠ V205), P194 (= P206), S198 (≠ K210), L202 (≠ I214)
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
43% identity, 57% coverage: 4:305/531 of query aligns to 2:302/304 of 1wwkA
- active site: S96 (≠ N100), R230 (= R234), D254 (= D258), E259 (= E263), H278 (= H281)
- binding nicotinamide-adenine-dinucleotide: V100 (≠ T104), G146 (= G150), F147 (≠ A151), G148 (= G152), R149 (≠ N153), I150 (= I154), Y168 (= Y172), D169 (= D173), P170 (= P174), V201 (= V205), P202 (= P206), T207 (= T211), T228 (≠ C232), S229 (≠ A233), D254 (= D258), H278 (= H281), G280 (= G283)
7cvpA The crystal structure of human phgdh from biortus.
47% identity, 42% coverage: 82:303/531 of query aligns to 33:254/254 of 7cvpA
- binding nicotinamide-adenine-dinucleotide: G101 (= G150), G103 (= G152), R104 (≠ N153), I105 (= I154), Y123 (= Y172), D124 (= D173), P125 (= P174), I126 (≠ F175), H155 (= H204), T156 (≠ V205), P157 (= P206), T162 (= T211), C183 (= C232), A184 (= A233), R185 (= R234), H232 (= H281), G234 (= G283)
P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
36% identity, 60% coverage: 4:320/531 of query aligns to 57:383/466 of P87228
- S87 (≠ D35) modified: Phosphoserine
- S258 (≠ T208) modified: Phosphoserine
2p9eA Crystal structure of g336v mutant of e.Coli phosphoglycerate dehydrogenase (see paper)
38% identity, 60% coverage: 4:320/531 of query aligns to 8:327/406 of 2p9eA
- active site: N104 (= N100), R236 (= R234), D260 (= D258), E265 (= E263), H288 (= H281)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G156 (= G152), H157 (≠ N153), I158 (= I154), Y176 (= Y172), D177 (= D173), I178 (≠ S177), H206 (= H204), V207 (= V205), P208 (= P206), S212 (≠ K210), A234 (≠ C232), S235 (≠ A233), R236 (= R234), H288 (= H281), G290 (= G283)
5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
33% identity, 57% coverage: 1:301/531 of query aligns to 1:308/334 of 5aovA
- active site: L100 (≠ N100), R241 (= R234), D265 (= D258), E270 (= E263), H288 (= H281)
- binding glyoxylic acid: M52 (≠ R52), L53 (≠ S53), L53 (≠ S53), Y74 (≠ A74), A75 (≠ G75), V76 (≠ I76), G77 (= G77), R241 (= R234), H288 (= H281)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (≠ I76), T104 (= T104), F158 (≠ A151), G159 (= G152), R160 (≠ N153), I161 (= I154), S180 (≠ D173), R181 (≠ P174), A211 (≠ H204), V212 (= V205), P213 (= P206), T218 (= T211), I239 (≠ C232), A240 (= A233), R241 (= R234), H288 (= H281), G290 (= G283)
1ybaA The active form of phosphoglycerate dehydrogenase (see paper)
38% identity, 60% coverage: 4:320/531 of query aligns to 8:327/406 of 1ybaA
- active site: N104 (= N100), R236 (= R234), D260 (= D258), E265 (= E263), H288 (= H281)
- binding 2-oxoglutaric acid: R56 (= R52), S57 (= S53), C79 (≠ G75), I80 (= I76)
- binding nicotinamide-adenine-dinucleotide: I80 (= I76), F102 (= F98), V108 (≠ T104), G154 (= G150), G156 (= G152), H157 (≠ N153), I158 (= I154), Y176 (= Y172), D177 (= D173), I178 (≠ S177), K181 (≠ R180), H206 (= H204), V207 (= V205), P208 (= P206), A234 (≠ C232), S235 (≠ A233), R236 (= R234), H288 (= H281), G290 (= G283)
- binding phosphate ion: G81 (= G77), N83 (≠ D79)
P0A9T0 D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli (strain K12) (see 2 papers)
38% identity, 60% coverage: 4:320/531 of query aligns to 12:331/410 of P0A9T0
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
Query Sequence
>WP_002721933.1 NCBI__GCF_000015985.1:WP_002721933.1
MAPRVLVSDELSETAVQIFRDRGVEVDYMPKLGKDKEKLAEIIGQYDGLAIRSATKVTEK
LLEQATNLKVIGRAGIGVDNVDIPAASRKGVIVMNTPFGNSITTAEHAIAMMFACARQLP
EANASTHAGKWEKSRFMGVELFNKTLGVIGAGNIGGIVCDRALGLSMKVVAYDPFLSEER
AKALGVTKVELDDLLARADFITLHVPLTDKTRNILSAEAIAKTKKGVRIINCARGGLVDE
KALAEAIKSGHVAGAAFDVFEVEPASESPLFNLPNVVVTPHLGASTTEAQENVALQVAEQ
MSDYLLTGAVQNALNMPSVTAEEAAVMGPWVKLAGHLGAFVGQMTDEPIKAINVLYDGAV
GEMNLAALNCATIAGIMKATNPDVNLVSAPVVAKERGIQISTTTQAKSGAFDAYIKLTVV
TDKRERSVAGTCFSDGKPRFIQIKGINIDAEVGRHMLYTTNEDVPGIIGLLGMTMGKNGV
NIANFTLGRTSVGQEAIAILYLDQAIDPKVVETLESTGLFQQVKPLEFDVA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory