Comparing WP_002723117.1 NCBI__GCF_000015985.1:WP_002723117.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
38% identity, 91% coverage: 22:258/261 of query aligns to 4:240/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
37% identity, 84% coverage: 21:240/261 of query aligns to 1:217/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
34% identity, 84% coverage: 22:240/261 of query aligns to 1:217/240 of 4ymuJ
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 86% coverage: 22:245/261 of query aligns to 1:227/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 86% coverage: 22:245/261 of query aligns to 2:228/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 86% coverage: 22:245/261 of query aligns to 2:228/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 86% coverage: 22:245/261 of query aligns to 2:228/344 of 3tuiC
3c4jA Abc protein artp in complex with atp-gamma-s
33% identity, 84% coverage: 22:240/261 of query aligns to 3:219/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
33% identity, 84% coverage: 22:240/261 of query aligns to 3:219/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
33% identity, 84% coverage: 22:240/261 of query aligns to 3:219/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
33% identity, 84% coverage: 22:240/261 of query aligns to 3:219/242 of 2oljA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 84% coverage: 22:240/261 of query aligns to 4:231/254 of 1g6hA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 85% coverage: 13:235/261 of query aligns to 8:224/378 of P69874
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 84% coverage: 22:240/261 of query aligns to 4:231/253 of 1g9xB
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
35% identity, 82% coverage: 23:235/261 of query aligns to 7:219/375 of 2d62A
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
32% identity, 84% coverage: 22:240/261 of query aligns to 84:317/345 of Q9AT00
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
33% identity, 78% coverage: 33:235/261 of query aligns to 19:214/257 of 8wm7D
Sites not aligning to the query:
8w9mD Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
32% identity, 78% coverage: 33:235/261 of query aligns to 17:212/256 of 8w9mD
Sites not aligning to the query:
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 82% coverage: 25:238/261 of query aligns to 6:220/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 82% coverage: 25:238/261 of query aligns to 6:220/353 of 1oxvA
>WP_002723117.1 NCBI__GCF_000015985.1:WP_002723117.1
MRTAPSAPEEERGASPLSAAPILSLRNIHKTFGSHQALRGVDLDIRPGECLGLIGDNAAG
KSTLSKVISGTYIPDEGEITMEGKPVRFATPSEARALNIEMVYQDLALCDHVDVVGNLFL
GRELKRGPFLDQKRMLAEAERMLAALEIRIPRLTAKVEKLSGGQRQAIAIARAASFEPKV
LLMDEPTSALAVAEVEAVLGLINRVKARGVAVVLVTHRMQDLFRVCDRVAVMYEGTKVAE
RAIADTNLQELVDLIVGKGGH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory