SitesBLAST
Comparing WP_003468267.1 NCBI__GCF_000359605.1:WP_003468267.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2dfvA Hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii (see paper)
36% identity, 90% coverage: 23:343/358 of query aligns to 19:330/346 of 2dfvA
- active site: C40 (= C44), G41 (= G45), T42 (≠ S46), H45 (≠ K49), H65 (= H73), E66 (= E74), C95 (= C106), C98 (= C109), C101 (= C112), C109 (= C120), K113 (≠ N124), P151 (= P166), A155 (= A170)
- binding nicotinamide-adenine-dinucleotide: G175 (= G191), P176 (≠ T192), L177 (= L193), E197 (≠ D213), P198 (≠ A214), R202 (= R218), F241 (≠ A257), S242 (≠ T258), A244 (≠ N260), L264 (≠ F280), G265 (≠ S281), L266 (≠ V282), I289 (= I302), T290 (≠ R303)
- binding zinc ion: C95 (= C106), C101 (= C112), C109 (= C120)
Sites not aligning to the query:
O58389 L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 2 papers)
36% identity, 90% coverage: 23:343/358 of query aligns to 21:332/348 of O58389
- C42 (= C44) binding Zn(2+)
- T44 (≠ S46) mutation to A: Total loss of enzymatic activity.
- H67 (= H73) binding Zn(2+)
- E68 (= E74) binding Zn(2+)
- C97 (= C106) binding Zn(2+)
- C100 (= C109) binding Zn(2+)
- C103 (= C112) binding Zn(2+)
- C111 (= C120) binding Zn(2+)
- E152 (= E165) mutation E->A,Q: Almost complete loss of enzymatic activity.; mutation to C: 120-fold decrease in catalytic efficiency.; mutation to D: Shows 3-fold higher turnover rate and reduced affinities toward L-threonine and NAD(+), compared to wild-type.; mutation to K: Total loss of enzymatic activity.
- L179 (= L193) binding NAD(+)
- E199 (≠ D213) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- R204 (= R218) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- LGL 266:268 (≠ FSV 280:282) binding NAD(+)
- IT 291:292 (≠ IR 302:303) binding NAD(+)
- R294 (≠ S305) mutation to A: 4000-fold decrease in catalytic efficiency.
Q5JI69 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
34% identity, 99% coverage: 4:358/358 of query aligns to 1:347/350 of Q5JI69
- L179 (= L193) binding NAD(+)
- E199 (≠ D213) binding NAD(+)
- R204 (= R218) binding NAD(+)
- LGL 266:268 (≠ FSV 280:282) binding NAD(+)
- IT 291:292 (≠ IR 302:303) binding NAD(+)
3gfbA L-threonine dehydrogenase (tktdh) from the hyperthermophilic archaeon thermococcus kodakaraensis (see paper)
35% identity, 99% coverage: 6:358/358 of query aligns to 1:345/347 of 3gfbA
- active site: C40 (= C44), G41 (= G45), T42 (≠ S46), H45 (≠ K49), H65 (= H73), E66 (= E74), C95 (= C106), C98 (= C109), C101 (= C112), C109 (= C120), K113 (≠ N124), P151 (= P166), A155 (= A170), K340 (= K353)
- binding nicotinamide-adenine-dinucleotide: G173 (= G189), G175 (= G191), P176 (≠ T192), L177 (= L193), S196 (≠ L212), E197 (≠ D213), P198 (≠ A214), R202 (= R218), F241 (≠ A257), S242 (≠ T258), A244 (≠ N260), L264 (≠ F280), G265 (≠ S281), L266 (≠ V282), I289 (= I302), T290 (≠ R303)
4ilkA Crystal structure of short chain alcohol dehydrogenase (rspb) from e. Coli cft073 (efi target efi-506413) complexed with cofactor nadh
30% identity, 94% coverage: 8:344/358 of query aligns to 4:321/337 of 4ilkA
- active site: C40 (= C44), G41 (= G45), S42 (= S46), H45 (≠ K49), H59 (= H73), E60 (= E74), C89 (= C106), C92 (= C109), C95 (= C112), C103 (= C120), A107 (≠ N124), P145 (= P166), A149 (= A170)
- binding manganese (ii) ion: C40 (= C44), H59 (= H73), E60 (= E74), E144 (= E165)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G168 (= G189), G170 (= G191), P171 (≠ T192), I172 (≠ L193), D193 (= D213), R194 (≠ A214), R198 (= R218), N213 (≠ P233), A235 (= A257), A236 (≠ T258), C237 (≠ G259), I241 (≠ G263), M258 (≠ F280), F260 (= F283)
- binding zinc ion: C89 (= C106), C92 (= C109), C95 (= C112), C103 (= C120)
Sites not aligning to the query:
4ej6A Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021
29% identity, 98% coverage: 8:358/358 of query aligns to 4:342/343 of 4ej6A
- active site: C40 (= C44), G41 (= G45), T42 (≠ S46), H45 (≠ K49), H61 (= H73), E62 (= E74), C91 (= C106), C94 (= C109), C97 (= C112), C105 (= C120), R109 (≠ N124), P147 (= P166), C151 (≠ A170), K337 (= K353)
- binding zinc ion: C91 (= C106), C94 (= C109), C97 (= C112), C105 (= C120)
4ejmA Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021 bound to NADP
29% identity, 98% coverage: 8:358/358 of query aligns to 4:342/342 of 4ejmA
- active site: C40 (= C44), G41 (= G45), T42 (≠ S46), H45 (≠ K49), H61 (= H73), E62 (= E74), C91 (= C106), C94 (= C109), C97 (= C112), C105 (= C120), R109 (≠ N124), P147 (= P166), C151 (≠ A170), K337 (= K353)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G170 (= G189), G172 (= G191), V173 (≠ T192), I174 (≠ L193), T194 (≠ D213), R195 (≠ A214), Q196 (≠ N215), K199 (≠ R218), C240 (≠ A257), E245 (≠ K262), T246 (≠ G263), L263 (≠ F280), V265 (= V282), I291 (≠ L307)
- binding zinc ion: C91 (= C106), C94 (= C109), C97 (= C112), C105 (= C120)
P07846 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries (Sheep) (see paper)
30% identity, 97% coverage: 10:357/358 of query aligns to 9:346/354 of P07846
- C43 (= C44) binding Zn(2+)
- Y49 (= Y57) binding substrate
- H67 (= H73) binding Zn(2+)
- E68 (= E74) binding Zn(2+)
- E153 (= E165) binding substrate
- R296 (≠ L307) binding substrate
- Y297 (≠ G308) binding substrate
5kiaA Crystal structure of l-threonine 3-dehydrogenase from burkholderia thailandensis
30% identity, 93% coverage: 21:354/358 of query aligns to 14:334/339 of 5kiaA
- active site: C37 (= C44), G38 (= G45), T39 (≠ S46), H42 (≠ K49), H61 (= H73), E62 (= E74), C91 (= C106), C94 (= C109), C97 (= C112), C105 (= C120), V109 (≠ N124), P147 (= P166), A151 (= A170), K333 (= K353)
- binding calcium ion: D146 (≠ E165), N150 (≠ C169), E288 (≠ P309)
- binding zinc ion: C91 (= C106), C94 (= C109), C97 (= C112), C105 (= C120)
Q00796 Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens (Human) (see 10 papers)
28% identity, 97% coverage: 10:357/358 of query aligns to 11:349/357 of Q00796
- C45 (= C44) binding Zn(2+)
- H70 (= H73) binding Zn(2+)
- E71 (= E74) binding Zn(2+)
- R110 (≠ K116) to P: in HMNR8; results in protein aggregation
- H135 (≠ F143) to R: in HMNR8; results in protein aggregation
- A153 (≠ S162) to D: in HMNR8; uncertain significance; results in protein aggregation; dbSNP:rs145813597
- I184 (≠ L193) binding NAD(+)
- D204 (= D213) binding NAD(+)
- R209 (= R218) binding NAD(+)
- Q239 (≠ G248) to L: in dbSNP:rs1042079
- N269 (≠ R276) to T: in dbSNP:rs930337
- VG-L 273:275 (≠ FSVF 280:283) binding NAD(+)
- VFR 297:299 (≠ SHL 305:307) binding NAD(+)
- V322 (= V330) to I: in HMNR8; uncertain significance; dbSNP:rs149975952
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1pl6A Human sdh/nadh/inhibitor complex (see paper)
28% identity, 97% coverage: 10:357/358 of query aligns to 10:348/356 of 1pl6A
- active site: C44 (= C44), G45 (= G45), S46 (= S46), H49 (≠ K49), H69 (= H73), E70 (= E74), R99 (≠ C106), D102 (≠ C109), C105 (= C112), S113 (≠ C120), F117 (≠ Y126), P156 (= P166), G160 (≠ A170), K344 (= K353)
- binding 4-[2-(hydroxymethyl)pyrimidin-4-yl]-n,n-dimethylpiperazine-1-sulfonamide: C44 (= C44), S46 (= S46), I56 (≠ G60), F59 (≠ P63), H69 (= H73), E155 (= E165), L274 (≠ F283), F297 (≠ H306)
- binding nicotinamide-adenine-dinucleotide: G181 (= G191), P182 (≠ T192), I183 (≠ L193), D203 (= D213), L204 (≠ A214), R208 (= R218), C249 (≠ A257), T250 (= T258), V272 (≠ F280), G273 (≠ S281), L274 (≠ F283), F297 (≠ H306), R298 (≠ L307)
- binding zinc ion: C44 (= C44), H69 (= H73)
3qe3A Sheep liver sorbitol dehydrogenase (see paper)
30% identity, 97% coverage: 10:357/358 of query aligns to 5:343/351 of 3qe3A
- active site: C39 (= C44), G40 (= G45), S41 (= S46), H44 (≠ K49), H64 (= H73), E65 (= E74), R94 (≠ C106), D97 (≠ C109), C100 (= C112), S108 (≠ C120), F112 (≠ Y126), P151 (= P166), G155 (≠ A170), K339 (= K353)
- binding glycerol: Y45 (≠ V50), F54 (≠ P63), T116 (≠ R130), R293 (≠ L307)
- binding zinc ion: C39 (= C44), H64 (= H73), E65 (= E74)
5vm2A Crystal structure of eck1772, an oxidoreductase/dehydrogenase of unknown specificity involved in membrane biogenesis from escherichia coli
28% identity, 95% coverage: 3:342/358 of query aligns to 9:327/347 of 5vm2A
- active site: C39 (= C44), G40 (= G45), S41 (= S46), H44 (≠ K49), H65 (= H73), E66 (= E74), C95 (= C106), C98 (= C109), C101 (= C112), C109 (= C120), D113 (≠ N124), P153 (= P166), G157 (≠ A170)
- binding magnesium ion: H65 (= H73), E66 (= E74), E152 (= E165)
- binding zinc ion: C95 (= C106), C98 (= C109), C101 (= C112), C109 (= C120)
Sites not aligning to the query:
P07913 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli (strain K12) (see paper)
29% identity, 94% coverage: 17:354/358 of query aligns to 11:336/341 of P07913
- C38 (= C44) mutation to D: Shows only 1% of wild-type catalytic activity. This mutant can be stimulated to the wild-type activity level after incubation with Zn(+).; mutation to S: Loss of catalytic activity. This mutant cannot be stimulated to the wild-type activity level after incubation with Zn(+).
1e3jA Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly (see paper)
30% identity, 97% coverage: 10:356/358 of query aligns to 4:344/348 of 1e3jA
- active site: C38 (= C44), G39 (= G45), S40 (= S46), H43 (≠ K49), H63 (= H73), E64 (= E74), C93 (= C106), C96 (= C109), C99 (= C112), C107 (= C120), T111 (≠ Y126), P150 (= P166), G154 (≠ A170), K341 (= K353)
- binding phosphate ion: A174 (= A190), A196 (= A214), R197 (≠ N215), S198 (≠ D216), R201 (= R218)
- binding zinc ion: C38 (= C44), H63 (= H73), E64 (= E74), C93 (= C106), C96 (= C109), C99 (= C112), C107 (= C120)
4cpdA Alcohol dehydrogenase tadh from thermus sp. Atn1
31% identity, 97% coverage: 8:354/358 of query aligns to 1:341/346 of 4cpdA
- active site: C38 (= C44), G39 (= G45), S40 (= S46), H43 (≠ K49), H59 (= H73), E60 (= E74), C89 (= C106), C92 (= C109), C95 (= C112), C103 (= C120), G107 (≠ N124), D152 (≠ E165), T156 (≠ C169), K340 (= K353)
- binding nicotinamide-adenine-dinucleotide: G39 (= G45), S40 (= S46), T156 (≠ C169), G178 (= G191), P179 (≠ T192), V180 (≠ L193), D200 (= D213), R201 (≠ A214), R205 (= R218), A243 (= A257), V244 (≠ T258), V266 (≠ F280), V268 (= V282), L292 (≠ H306), A293 (≠ L307), F333 (≠ A346)
- binding zinc ion: C38 (= C44), H59 (= H73), C89 (= C106), C92 (= C109), C95 (= C112), C103 (= C120), D152 (≠ E165)
P27867 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus (Rat) (see paper)
29% identity, 97% coverage: 10:357/358 of query aligns to 11:349/357 of P27867
- C45 (= C44) binding Zn(2+)
- H70 (= H73) binding Zn(2+)
- E71 (= E74) binding Zn(2+)
- E156 (= E165) binding Zn(2+)
- D204 (= D213) binding NAD(+)
- R209 (= R218) binding NAD(+)
- VG-M 273:275 (≠ FSVF 280:283) binding NAD(+)
- VFR 297:299 (≠ SHL 305:307) binding NAD(+)
2ejvA Crystal structure of threonine 3-dehydrogenase complexed with NAD+
28% identity, 98% coverage: 8:358/358 of query aligns to 1:341/343 of 2ejvA
- active site: C38 (= C44), G39 (= G45), T40 (≠ S46), H43 (≠ K49), H63 (= H73), E64 (= E74), C93 (= C106), C96 (= C109), C99 (= C112), C107 (= C120), Q111 (≠ N124), P149 (= P166), A153 (= A170), K336 (= K353)
- binding nicotinamide-adenine-dinucleotide: G172 (= G189), G174 (= G191), P175 (≠ T192), I176 (≠ L193), S195 (≠ L212), D196 (= D213), P197 (≠ A214), R201 (= R218), F238 (≠ A257), S239 (≠ T258), N241 (= N260), A244 (≠ G263), L261 (≠ F280), G262 (≠ S281), I263 (≠ V282)
- binding zinc ion: C38 (= C44), H63 (= H73), E64 (= E74), C96 (= C109), C99 (= C112), C107 (= C120)
2dq4A Crystal structure of threonine 3-dehydrogenase
28% identity, 98% coverage: 8:358/358 of query aligns to 1:341/343 of 2dq4A
- active site: C38 (= C44), G39 (= G45), T40 (≠ S46), H43 (≠ K49), H63 (= H73), E64 (= E74), C93 (= C106), C96 (= C109), C99 (= C112), C107 (= C120), Q111 (≠ N124), P149 (= P166), A153 (= A170), K336 (= K353)
- binding zinc ion: C38 (= C44), H63 (= H73), E64 (= E74), C93 (= C106), C96 (= C109), C107 (= C120)
Q5SKS4 L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
28% identity, 98% coverage: 8:358/358 of query aligns to 1:341/343 of Q5SKS4
- C38 (= C44) binding Zn(2+)
- H63 (= H73) binding Zn(2+)
- E64 (= E74) binding Zn(2+)
- C93 (= C106) binding Zn(2+)
- C96 (= C109) binding Zn(2+)
- C99 (= C112) binding Zn(2+)
- C107 (= C120) binding Zn(2+)
- I176 (≠ L193) binding NAD(+)
- D196 (= D213) binding NAD(+)
- R201 (= R218) binding NAD(+)
- LGI 261:263 (≠ FSV 280:282) binding NAD(+)
- IAG 286:288 (≠ IRG 302:304) binding NAD(+)
Query Sequence
>WP_003468267.1 NCBI__GCF_000359605.1:WP_003468267.1
MSQLPETMKAVVCHGPEDYRVEEVNTPTAGPGEIVIKVKACGICGSDLKVYHGADMYWAG
DDPWLKAPVIPGHEFYGEVAELGEGAAETHDLQIGDRITTDQINPCGNCMYCNSGKYWMC
QVHNMYGFQREVAEGAMAEYMKFSPQSKIYKVPEGVNDYEASLLEPMACAVHAVQRATIE
FEDFVVMAGAGTLGLCMIQLIKLKTPKTLVVLDANDRRLELAKKYGADICMNPTKEDVIQ
KVKDLTNGYGCDVYIEATGNPKGVTQGLEMVRKLGRYVEFSVFGKETTTDWSVIGDKKEL
DIRGSHLGPYTYPIAIDLFERGLVSAEGIVTHTFDIDDFPQAIATAQDPEAIKVSIKP
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory