Comparing WP_003543674.1 NCBI__GCF_000023185.1:WP_003543674.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
O14289 3-isopropylmalate dehydratase; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
67% identity, 100% coverage: 1:468/469 of query aligns to 5:478/758 of O14289
Sites not aligning to the query:
4kp1A Crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) (see paper)
36% identity, 95% coverage: 21:467/469 of query aligns to 20:422/423 of 4kp1A
4nqyA The reduced form of mj0499 (see paper)
34% identity, 95% coverage: 21:467/469 of query aligns to 19:409/409 of 4nqyA
P19414 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
29% identity, 79% coverage: 89:460/469 of query aligns to 150:500/778 of P19414
Sites not aligning to the query:
P39533 Homocitrate dehydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
26% identity, 98% coverage: 2:460/469 of query aligns to 51:505/789 of P39533
Sites not aligning to the query:
5acnA Structure of activated aconitase. Formation of the (4fe-4s) cluster in the crystal (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 127:476/754 of 5acnA
Sites not aligning to the query:
1b0kA S642a:fluorocitrate complex of aconitase (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 1b0kA
Sites not aligning to the query:
P16276 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Sus scrofa (Pig) (see 3 papers)
27% identity, 79% coverage: 89:460/469 of query aligns to 154:503/781 of P16276
Sites not aligning to the query:
P20004 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus (Bovine) (see 2 papers)
27% identity, 79% coverage: 89:460/469 of query aligns to 154:503/780 of P20004
Sites not aligning to the query:
8acnA Crystal structures of aconitase with isocitrate and nitroisocitrate bound (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 8acnA
Sites not aligning to the query:
1fghA Complex with 4-hydroxy-trans-aconitate (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 1fghA
Sites not aligning to the query:
1amjA Steric and conformational features of the aconitase mechanism (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 1amjA
Sites not aligning to the query:
1amiA Steric and conformational features of the aconitase mechanism (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 1amiA
Sites not aligning to the query:
1acoA Crystal structure of aconitase with transaconitate bound (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 1acoA
Sites not aligning to the query:
1nisA Crystal structure of aconitase with trans-aconitate and nitrocitrate bound (see paper)
27% identity, 79% coverage: 89:460/469 of query aligns to 126:475/753 of 1nisA
Sites not aligning to the query:
2b3xA Structure of an orthorhombic crystal form of human cytosolic aconitase (irp1) (see paper)
26% identity, 75% coverage: 110:460/469 of query aligns to 184:563/888 of 2b3xA
Sites not aligning to the query:
P21399 Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Homo sapiens (Human) (see 2 papers)
26% identity, 75% coverage: 110:460/469 of query aligns to 185:564/889 of P21399
Sites not aligning to the query:
Q9SIB9 Aconitate hydratase 3, mitochondrial; Aconitase 3; mACO1; Citrate hydro-lyase 3; EC 4.2.1.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
24% identity, 75% coverage: 109:460/469 of query aligns to 271:660/990 of Q9SIB9
Sites not aligning to the query:
P09339 Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis (strain 168) (see 2 papers)
27% identity, 77% coverage: 101:460/469 of query aligns to 177:577/909 of P09339
Sites not aligning to the query:
3snpA Crystal structure analysis of iron regulatory protein 1 in complex with ferritin h ire RNA (see paper)
25% identity, 75% coverage: 110:460/469 of query aligns to 166:533/850 of 3snpA
Sites not aligning to the query:
>WP_003543674.1 NCBI__GCF_000023185.1:WP_003543674.1
MSAPRTLYDKIWDDHLVDEQPDGTCLLYIDRHLVHEVTSPQAFEGLRMTGRKVRAPEKTL
AVVDHNVPTSPDRHLGIKNEESRIQVEALATNAAEFGVEYYSASDKRQGIVHIVGPEQGF
TLPGMTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGLLPPH
VTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRALSMEGRMTVCNMTIEGGARAGLIAPDE
KTFEYIKGKPRAPKGEALEQAIAYWKTLQTDEGAHYDRVVVLDAASLPPIVSWGSSPEDV
ISVQGIVPNPDDIQDETKRTSKWRALDYMGLKPGTKMTDITLDRVFIGSCTNGRIEDLRE
VAKVVEGKTVASTVDAMIVPGSGLVKEQAEAEGLDKIFKAAGFDWREPGCSMCLAMNDDR
LKPGERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDIREWN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory