SitesBLAST
Comparing WP_003548647.1 NCBI__GCF_000009265.1:WP_003548647.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 12 hits to proteins with known functional sites (download)
P25080 Urocanate hydratase; Urocanase; Imidazolonepropionate hydrolase; EC 4.2.1.49 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 4 papers)
77% identity, 100% coverage: 2:556/557 of query aligns to 3:557/557 of P25080
- GG 53:54 (= GG 52:53) binding NAD(+)
- C64 (≠ D63) mutation to A: No loss of activity.
- Q131 (= Q130) binding NAD(+)
- GMG 177:179 (= GMG 176:178) binding NAD(+)
- C192 (= C191) mutation to A: No loss of activity.
- ECQQSR 197:202 (≠ ECNPDS 196:201) binding NAD(+)
- C198 (= C197) mutation to A: No loss of activity.
- NA 243:244 (= NA 242:243) binding NAD(+)
- QTSAH 264:268 (= QTSAH 263:267) binding NAD(+)
- YL 274:275 (= YL 273:274) binding NAD(+)
- YG 323:324 (= YG 322:323) binding NAD(+)
- C355 (= C354) mutation to A: Minor loss in activity.
- C411 (= C410) mutation to A: Loss of activity.
- RE 455:456 (= RE 454:455) binding NAD(+)
- G493 (= G492) binding NAD(+)
- C544 (= C543) mutation to A: No loss of activity.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1uwkA The high resolution structure of urocanate hydratase from pseudomonas putida in complex with urocanate (see paper)
77% identity, 99% coverage: 3:556/557 of query aligns to 1:554/554 of 1uwkA
- binding nicotinamide-adenine-dinucleotide: Y49 (= Y51), G50 (= G52), G51 (= G53), I142 (= I144), G173 (= G175), G174 (= G176), M175 (= M177), G176 (= G178), E194 (= E196), S195 (≠ C197), Q196 (≠ N198), N240 (= N242), A241 (= A243), Q261 (= Q263), T262 (= T264), S263 (= S265), H265 (= H267), Y271 (= Y273), L272 (= L274), W278 (≠ M280), Y320 (= Y322), G321 (= G323), N322 (= N324), F342 (= F344), G490 (= G492)
- binding (2e)-3-(1h-imidazol-4-yl)acrylic acid: Y49 (= Y51), M129 (= M131), T130 (= T132), G141 (= G143), M175 (= M177), R359 (= R361), D440 (= D442)
7jfzA Structure of urocanate hydratase from legionella pneumophila bound to NAD
69% identity, 98% coverage: 9:552/557 of query aligns to 1:544/547 of 7jfzA
- binding nicotinamide-adenine-dinucleotide: G167 (= G175), G168 (= G176), M169 (= M177), E188 (= E196), C189 (= C197), R193 (≠ S201), N234 (= N242), A235 (= A243), Q255 (= Q263), T256 (= T264), S257 (= S265), H259 (= H267), Y265 (= Y273), L266 (= L274), Y314 (= Y322), G315 (= G323), N316 (= N324), F336 (= F344), R446 (= R454)
P25503 Urocanate hydratase; Urocanase; Imidazolonepropionate hydrolase; EC 4.2.1.49 from Bacillus subtilis (strain 168)
64% identity, 98% coverage: 9:552/557 of query aligns to 6:549/552 of P25503
2fknB Crystal structure of urocanase from bacillus subtilis
64% identity, 97% coverage: 11:552/557 of query aligns to 2:543/546 of 2fknB
- binding nicotinamide-adenine-dinucleotide: Y42 (= Y51), G43 (= G52), G44 (= G53), I135 (= I144), G166 (= G175), G167 (= G176), M168 (= M177), E187 (= E196), V188 (≠ C197), R192 (≠ S201), N233 (= N242), A234 (= A243), Q254 (= Q263), T255 (= T264), S256 (= S265), H258 (= H267), Y264 (= Y273), V265 (≠ L274), N315 (= N324), F335 (= F344), R445 (= R454), G483 (= G492)
Q5L084 Urocanate hydratase; Urocanase; Imidazolonepropionate hydrolase; EC 4.2.1.49 from Geobacillus kaustophilus (strain HTA426)
66% identity, 98% coverage: 9:552/557 of query aligns to 5:548/551 of Q5L084
1x87A 2.4a x-ray structure of urocanase protein complexed with NAD
58% identity, 97% coverage: 11:552/557 of query aligns to 1:492/495 of 1x87A
- binding nicotinamide-adenine-dinucleotide: G134 (= G175), G135 (= G176), M136 (= M177), E155 (= E196), V156 (≠ C197), R160 (≠ S201), N201 (= N242), A202 (= A243), Q222 (= Q263), T223 (= T264), H226 (= H267), Y232 (= Y273), I233 (≠ L274), Y281 (= Y322), G282 (= G323), N283 (= N324), F303 (= F344)
7nedA Thiourocanate hydratase from paenibacillus sp. Soil724d2 in complex with cofactor NAD+ and urocanate (see paper)
51% identity, 97% coverage: 11:550/557 of query aligns to 3:540/545 of 7nedA
- binding nicotinamide-adenine-dinucleotide: Y41 (= Y51), A42 (≠ G52), A43 (≠ G53), G165 (= G175), G166 (= G176), M167 (= M177), E186 (= E196), V187 (≠ C197), R191 (≠ S201), N232 (= N242), A233 (= A243), Q253 (= Q263), T254 (= T264), H257 (= H267), Y263 (= Y273), V264 (≠ L274), G313 (= G323), N314 (= N324), I444 (≠ R454), Y484 (≠ G494)
- binding (2e)-3-(1h-imidazol-4-yl)acrylic acid: Y41 (= Y51), L121 (≠ M131), T122 (= T132), M167 (= M177), R351 (= R361), D432 (= D442)
8q9vA S-methylthiourocanate hydratase from variovorax sp. Ra8 in complex with NAD+ and imidazolone propionate (see paper)
50% identity, 97% coverage: 9:549/557 of query aligns to 3:536/543 of 8q9vA
- binding nicotinamide-adenine-dinucleotide: Y43 (= Y51), M44 (≠ G52), N45 (≠ G53), I136 (= I144), G167 (= G175), G168 (= G176), M169 (= M177), D188 (≠ E196), V189 (≠ C197), S193 (= S201), N234 (= N242), A235 (= A243), Q255 (= Q263), C256 (≠ T264), M257 (≠ S265), Y264 (= Y273), V265 (≠ L274), Y313 (= Y322), N315 (= N324)
- binding 3-[(4~{R})-5-oxidanylidene-1,4-dihydroimidazol-4-yl]propanoic acid: Y43 (= Y51), M44 (≠ G52), M123 (= M131), D433 (= D442), R445 (= R454)
A0A6P2DXK2 S-methyl thiourocanate hydratase; S-Me-TUC; S-methyl TUC; EC 4.2.1.- from Variovorax sp. (strain JCM 16519 / RA8) (see paper)
50% identity, 96% coverage: 9:540/557 of query aligns to 8:532/549 of A0A6P2DXK2
- M49 (≠ G52) binding NAD(+)
- G173 (= G176) binding NAD(+)
- M174 (= M177) binding NAD(+)
- G175 (= G178) binding NAD(+)
- D193 (≠ E196) binding NAD(+)
- S198 (= S201) binding NAD(+)
- N239 (= N242) binding NAD(+)
- A240 (= A243) binding NAD(+)
- Q260 (= Q263) binding NAD(+)
- V270 (≠ L274) binding NAD(+)
- Y318 (= Y322) binding NAD(+)
- R450 (= R454) mutation to A: Loss of activity.
6uekA Structure of urocanate hydratase from trypanosoma cruzi in complex with NAD+ (see paper)
37% identity, 99% coverage: 1:550/557 of query aligns to 78:639/660 of 6uekA
- binding nicotinamide-adenine-dinucleotide: G251 (= G173), G253 (= G175), G254 (= G176), M255 (= M177), S256 (≠ G178), A273 (≠ V195), E274 (= E196), N320 (= N242), V321 (≠ A243), Q342 (= Q263), T343 (= T264), S344 (= S265), H346 (= H267), Y354 (≠ L274), Y402 (= Y322), N404 (= N324)
6uekD Structure of urocanate hydratase from trypanosoma cruzi in complex with NAD+ (see paper)
37% identity, 99% coverage: 1:550/557 of query aligns to 63:569/585 of 6uekD
- binding nicotinamide-adenine-dinucleotide: G236 (= G173), G239 (= G176), M240 (= M177), S241 (≠ G178), A258 (≠ V195), N300 (= N242), V301 (≠ A243), Q312 (= Q263), T313 (= T264), S314 (= S265), H316 (= H267), G322 (= G272), Y324 (≠ L274), N368 (= N324)
Query Sequence
>WP_003548647.1 NCBI__GCF_000009265.1:WP_003548647.1
MNNPRHNIREVRAPRGNDLNAKSWMTEAPLRMLMNNLDPDVAENPNELVVYGGIGRAART
WEDFDRIVATLKTLTEEETLVVQSGKPVGVFRTHKDAPRVLIANSNLVPHWATWDHFNEL
DKKGLAMYGQMTAGSWIYIGTQGIVQGTYETFVEAGRQHYGGNLKGKWILTGGLGGMGGA
QPLAAVMAGACCLAVECNPDSIDFRLRTRYVDAKAETLDEALEMIDRWTKAGEAKSVGLL
GNAAEILPEMVRRGIRPDIVTDQTSAHDPINGYLPKGWTMGEWKAKRESDPKAVEKAARA
SMREHVEAMIAFWNAGVPTLDYGNNIRQVAKDEGLENAFAFPGFVPAYIRPLFCRGIGPF
RWAALSGDPEDIYKTDAKVKELLPDNKHLHHWLDMARERIAFQGLPARICWVGLGDRHKL
GLAFNEMVRTGELSAPIVIGRDHLDSGSVASPNRETEAMKDGSDAVSDWPLLNALLNTAS
GATWVSLHHGGGVGMGFSQHSGMVICADGTDDAARRLERVLWNDPATGVMRHADAGYEIA
IDCAKEKGLRLPGILGN
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory