Comparing WP_003940102.1 NCBI__GCF_002893965.1:WP_003940102.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; SCOT; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; Succinate-coenzyme A transferase; Succinyl-CoA:3-oxoacid CoA transferase; EC 2.8.3.5 from Sus scrofa (Pig) (see 3 papers)
60% identity, 94% coverage: 11:213/215 of query aligns to 302:506/520 of Q29551
Sites not aligning to the query:
3k6mC Dynamic domains of succinyl-coa:3-ketoacid-coenzyme a transferase from pig heart. (see paper)
59% identity, 97% coverage: 5:213/215 of query aligns to 243:453/466 of 3k6mC
Sites not aligning to the query:
1o9lA Succinate:coenzyme-a transferase (pig heart)
60% identity, 96% coverage: 8:213/215 of query aligns to 247:454/468 of 1o9lA
Sites not aligning to the query:
3oxoE Succinyl-coa:3-ketoacid coa transferase from pig heart covalently bound to coa (see paper)
59% identity, 96% coverage: 8:213/215 of query aligns to 242:449/462 of 3oxoE
8i3yD Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
56% identity, 93% coverage: 11:210/215 of query aligns to 257:456/471 of 8i3yD
Sites not aligning to the query:
8i40A Crystal structure of asct from trypanosoma brucei in complex with coa.
56% identity, 93% coverage: 11:210/215 of query aligns to 253:452/467 of 8i40A
8i3yA Crystal structure of asct from trypanosoma brucei in complex with succinyl-coa.
53% identity, 97% coverage: 3:210/215 of query aligns to 239:446/459 of 8i3yA
Sites not aligning to the query:
2ahvA Crystal structure of acyl-coa transferase from e. Coli o157:h7 (ydif)- thioester complex with coa- 1 (see paper)
25% identity, 54% coverage: 87:203/215 of query aligns to 338:475/512 of 2ahvA
Sites not aligning to the query:
>WP_003940102.1 NCBI__GCF_002893965.1:WP_003940102.1
MTSVLPTKLTREEMAARVARELEDGQYVNLGIGMPTLVPNYLPTDITVVLHSENGVLGVG
PYPTEDELDPELINAGKETITVLPGASFFDSSASFGMIRGGQVDVAVLGAMQVSATGDLA
NWMIPGHMVKGMGGAMDLVHGAKRVIVMMEHVSKKGEHKIVEKCSLPLTGKGCVQRIITD
MAVIDVTDDGLRLVETAPGISVEDVVAATGAKLIL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory