Comparing WP_004042992.1 NCBI__GCF_000337315.1:WP_004042992.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4iyoB Crystal structure of cystathionine gamma lyase from xanthomonas oryzae pv. Oryzae (xometc) in complex with e-site serine, a-site serine, a- site external aldimine structure with aminoacrylate and a-site iminopropionate intermediates (see paper)
56% identity, 97% coverage: 8:382/386 of query aligns to 4:380/381 of 4iyoB
4iy7B Crystal structure of cystathionine gamma lyase (xometc) from xanthomonas oryzae pv. Oryzae in complex with e-site serine, a-site external aldimine structure with serine and a-site external aldimine structure with aminoacrylate intermediates (see paper)
56% identity, 97% coverage: 8:382/386 of query aligns to 4:380/381 of 4iy7B
4iy7A Crystal structure of cystathionine gamma lyase (xometc) from xanthomonas oryzae pv. Oryzae in complex with e-site serine, a-site external aldimine structure with serine and a-site external aldimine structure with aminoacrylate intermediates (see paper)
56% identity, 97% coverage: 8:382/386 of query aligns to 4:380/381 of 4iy7A
4ixzA Native structure of cystathionine gamma lyase (xometc) from xanthomonas oryzae pv. Oryzae at ph 9.0 (see paper)
56% identity, 97% coverage: 8:382/386 of query aligns to 4:380/381 of 4ixzA
4iyoD Crystal structure of cystathionine gamma lyase from xanthomonas oryzae pv. Oryzae (xometc) in complex with e-site serine, a-site serine, a- site external aldimine structure with aminoacrylate and a-site iminopropionate intermediates (see paper)
56% identity, 97% coverage: 8:382/386 of query aligns to 4:380/384 of 4iyoD
6cjaA Crystal structure of cystathionine beta-lyase from legionella pneumophila philadelphia 1 in complex with alanyl-plp and serine
56% identity, 97% coverage: 8:382/386 of query aligns to 4:380/381 of 6cjaA
4ixsB Native structure of xometc at ph 5.2 (see paper)
55% identity, 97% coverage: 8:382/386 of query aligns to 3:371/372 of 4ixsB
6k1lB E53a mutant of a putative cystathionine gamma-lyase (see paper)
54% identity, 97% coverage: 8:383/386 of query aligns to 5:382/382 of 6k1lB
6k1lA E53a mutant of a putative cystathionine gamma-lyase (see paper)
54% identity, 97% coverage: 8:383/386 of query aligns to 5:382/382 of 6k1lA
7ba4A Structure of cystathionine gamma-lyase from pseudomonas aeruginosa
54% identity, 97% coverage: 10:382/386 of query aligns to 9:371/377 of 7ba4A
7d7oB Crystal structure of cystathionine gamma-lyase from bacillus cereus atcc 14579 (see paper)
51% identity, 97% coverage: 7:382/386 of query aligns to 2:376/377 of 7d7oB
6le4A Crystal structure of cystathionine gamma-lyase from lactobacillus plantarum complexed with cystathionine (see paper)
51% identity, 97% coverage: 7:382/386 of query aligns to 2:375/380 of 6le4A
6ldoA Crystal structure of cystathionine gamma-lyase from lactobacillus plantarum complexed with l-serine (see paper)
51% identity, 97% coverage: 7:382/386 of query aligns to 2:375/381 of 6ldoA
5x5hA Crystal structure of metb from corynebacterium glutamicum (see paper)
50% identity, 97% coverage: 10:383/386 of query aligns to 10:382/385 of 5x5hA
3qhxA Crystal structure of cystathionine gamma-synthase metb (cgs) from mycobacterium ulcerans agy99 bound to hepes (see paper)
54% identity, 97% coverage: 8:382/386 of query aligns to 3:376/377 of 3qhxA
7mcyH Crystal structure of staphylococcus aureus cystathionine gamma lyase, holoenzyme with bound nl3 (see paper)
49% identity, 97% coverage: 9:383/386 of query aligns to 4:378/380 of 7mcyH
Sites not aligning to the query:
7mcuH Crystal structure of staphylococcus aureus cystathionine gamma lyase, holoenzyme with bound nl2 (see paper)
49% identity, 97% coverage: 9:383/386 of query aligns to 4:378/380 of 7mcuH
Sites not aligning to the query:
7mctH Crystal structure of staphylococcus aureus cystathionine gamma lyase, holoenzyme with bound nl1 (see paper)
49% identity, 97% coverage: 9:383/386 of query aligns to 4:378/380 of 7mctH
Sites not aligning to the query:
7mcqA Crystal structure of staphylococcus aureus cystathionine gamma lyase, aoaa-bound enzyme in dimeric form (see paper)
49% identity, 97% coverage: 9:383/386 of query aligns to 4:378/380 of 7mcqA
7mcbH Crystal structure of staphylococcus aureus cystathionine gamma lyase holoenzyme (see paper)
49% identity, 97% coverage: 9:383/386 of query aligns to 4:378/380 of 7mcbH
Sites not aligning to the query:
>WP_004042992.1 NCBI__GCF_000337315.1:WP_004042992.1
MSEDERRIETRAIHAGQEPDEETGALMTPIYANSTYAQDGPGDHRGYEYSRTGNPTRTDL
ESNLAALEHGSYGRAFASGMGSINTALNLLEAGDHVVAGNDVYGGTHRIFTQVYEKYDLE
FDFVDTTDHDAVRDAVSEETELVWVETPTNPLMRVNDIGALADIAHEVDALCAVDNTFAT
PYLQRPLDHGADIVSHSLTKYLGGHSDVVGGALVTDDEELDEKLGFYQNSVGATPSPFDC
FLVLRGTKTLPVRMDRHCDNARDLAAWLDDHEAVSEVFYPGLDSHPQHDLAAEQMDDFGG
MLSFELDGPLEQASTVVEETGVFTLAESLGGVESLIEQPAAMTHAAIPREERLEAGLTDG
LIRVSVGIEHIDDMKADLQRAFDAAF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory