Comparing WP_004044251.1 NCBI__GCF_000337315.1:WP_004044251.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3al0B Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
46% identity, 97% coverage: 14:495/496 of query aligns to 6:480/482 of 3al0B
3h0rH Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
45% identity, 84% coverage: 14:432/496 of query aligns to 6:410/410 of 3h0rH
3h0rE Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
45% identity, 84% coverage: 14:432/496 of query aligns to 6:410/410 of 3h0rE
3h0rB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
45% identity, 84% coverage: 14:432/496 of query aligns to 6:410/410 of 3h0rB
3h0lB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
45% identity, 84% coverage: 14:432/496 of query aligns to 6:410/410 of 3h0lB
3ip4B The high resolution structure of gatcab (see paper)
42% identity, 97% coverage: 14:496/496 of query aligns to 6:474/482 of 3ip4B
2g5iB Structure of tRNA-dependent amidotransferase gatcab complexed with adp-alf4 (see paper)
41% identity, 84% coverage: 14:432/496 of query aligns to 5:408/410 of 2g5iB
3kfuF Crystal structure of the transamidosome (see paper)
41% identity, 83% coverage: 14:424/496 of query aligns to 5:389/447 of 3kfuF
Sites not aligning to the query:
2df4B Structure of tRNA-dependent amidotransferase gatcab complexed with mn2+ (see paper)
41% identity, 80% coverage: 14:411/496 of query aligns to 5:388/399 of 2df4B
4wj3B Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa (see paper)
41% identity, 80% coverage: 14:411/496 of query aligns to 4:388/456 of 4wj3B
Sites not aligning to the query:
2d6fD Crystal structure of glu-tRNA(gln) amidotransferase in the complex with tRNA(gln) (see paper)
28% identity, 51% coverage: 10:262/496 of query aligns to 5:253/522 of 2d6fD
Sites not aligning to the query:
>WP_004044251.1 NCBI__GCF_000337315.1:WP_004044251.1
MTAQALEQRELAVVIGLEVHVQLETATKIFCSCSTEPAEDEEPNTRVCPVCLGLPGALPV
LNEAAVESAVKIGKALNADIAEDTRFHRKNYYYPDLPKNFQITQYDAPICADGTLEVSVE
GTRRDIGITRAHLEEDPGSLQHKGGSIDTADYTLVNYNRAGTPLVEIVTEPDFRSPQETR
AFLAKLEEVLEYLGVFDATRDGSLRIDANISLVPADEVDDDGAISDDALEAANRTEVKNI
SSHKGAEKALAYEVTRQKNAIQRGRAVEQETRHWDESRGITVSMRSKEEEKDYRYFREAD
LPPLQVAHWKEEIPIPELPDARRERFRTEYGIDEESASKLTSTKEVADFFEDVAAEFDAD
LAATWVADNLLGELNYRDMHITDVSDRLDEFTRLVELVAADEVTTKNAEEIVLREMLDEG
KDPDTIVNEAGLGKADDDEIGGFVQEAIDENPDAVEDYHNGEGGALNFLVGQVMQKSQGS
ADPGTVNQLLRERLDE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory