Comparing WP_004045322.1 NCBI__GCF_000337315.1:WP_004045322.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
1gpmA Escherichia coli gmp synthetase complexed with amp and pyrophosphate (see paper)
31% identity, 81% coverage: 3:193/237 of query aligns to 5:198/501 of 1gpmA
Sites not aligning to the query:
5tw7F Crystal structure of a gmp synthase (glutamine-hydrolyzing) from neisseria gonorrhoeae
29% identity, 91% coverage: 1:215/237 of query aligns to 1:210/490 of 5tw7F
Sites not aligning to the query:
7d54A Crstal structure msgatase with gln (see paper)
31% identity, 76% coverage: 4:182/237 of query aligns to 5:188/242 of 7d54A
Sites not aligning to the query:
7yc6A Crystal structure of d110p mutant of gatase subunit of methanocaldococcus jannaschii gmp synthetase
29% identity, 55% coverage: 45:175/237 of query aligns to 43:160/183 of 7yc6A
2ywcA Crystal structure of gmp synthetase from thermus thermophilus in complex with xmp
36% identity, 48% coverage: 79:191/237 of query aligns to 71:181/475 of 2ywcA
Sites not aligning to the query:
P49915 GMP synthase [glutamine-hydrolyzing]; GMP synthetase; Glutamine amidotransferase; EC 6.3.5.2 from Homo sapiens (Human) (see paper)
30% identity, 62% coverage: 46:193/237 of query aligns to 69:209/693 of P49915
Sites not aligning to the query:
2vxoB Human gmp synthetase in complex with xmp (see paper)
29% identity, 62% coverage: 46:193/237 of query aligns to 47:184/658 of 2vxoB
Sites not aligning to the query:
8hx8A Crystal structure of 4-amino-4-deoxychorismate synthase from streptomyces venezuelae co-crystallized with chorismate (see paper)
35% identity, 58% coverage: 39:175/237 of query aligns to 42:173/673 of 8hx8A
Sites not aligning to the query:
1i7qB Anthranilate synthase from s. Marcescens (see paper)
33% identity, 43% coverage: 80:180/237 of query aligns to 77:176/192 of 1i7qB
Sites not aligning to the query:
P00903 Aminodeoxychorismate synthase component 2; ADC synthase; ADCS; 4-amino-4-deoxychorismate synthase component 2; Aminodeoxychorismate synthase, glutamine amidotransferase component; EC 2.6.1.85 from Escherichia coli (strain K12) (see paper)
35% identity, 41% coverage: 80:175/237 of query aligns to 73:170/187 of P00903
P00900 Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 from Serratia marcescens (see 3 papers)
30% identity, 43% coverage: 80:180/237 of query aligns to 78:177/193 of P00900
Sites not aligning to the query:
Q18990 Multifunctional protein pyr-1; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Caenorhabditis elegans (see 3 papers)
27% identity, 56% coverage: 45:176/237 of query aligns to 217:342/2198 of Q18990
Sites not aligning to the query:
P08955 Multifunctional protein CAD; Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Mesocricetus auratus (Golden hamster) (see paper)
29% identity, 57% coverage: 42:176/237 of query aligns to 210:339/2225 of P08955
Sites not aligning to the query:
>WP_004045322.1 NCBI__GCF_000337315.1:WP_004045322.1
MTRPRLAFLDASHGDSSTSRNFRRELDADLVEFDVTDGRLPDHFDYDGVVISGSSSSVYW
DEPWIRNLVSWVADADERGVPLLGVCFGHQVVAAALGGTVEDMGAFELGYNEIERTRPDD
GNDILAGIGERFTVFTSHGDRVTELPSGADLLAENEFGVHAFRRNHAFGVQFHPEYDTDT
AEAIARQKDFLPDERIRSVVDGITPENYAAACEAKRLFDNFVTYVNRTNAGSVESAA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory