Comparing WP_004206522.1 NCBI__GCF_000025465.1:WP_004206522.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0A786 Aspartate carbamoyltransferase catalytic subunit; Aspartate transcarbamylase; ATCase; EC 2.1.3.2 from Escherichia coli (strain K12) (see 4 papers)
94% identity, 100% coverage: 1:311/311 of query aligns to 1:311/311 of P0A786
2ipoA E. Coli aspartate transcarbamoylase complexed with n-phosphonacetyl-l- asparagine (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2ipoA
2h3eA Structure of wild-type e. Coli aspartate transcarbamoylase in the presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2h3eA
2fzkA The structure of wild-type e. Coli aspartate transcarbamoylase in complex with novel t state inhibitors at 2.50 resolution (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2fzkA
2fzgA The structure of wild-type e. Coli aspartate transcarbamoylase in complex with novel t state inhibitors at 2.25 resolution (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2fzgA
2fzcA The structure of wild-type e. Coli aspartate transcarbamoylase in complex with novel t state inhibitors at 2.10 resolution (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2fzcA
2airA T-state active site of aspartate transcarbamylase:crystal structure of the carbamyl phosphate and l-alanosine ligated enzyme (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2airA
1za2A Structure of wild-type e. Coli aspartate transcarbamoylase in the presence of ctp, carbamoyl phosphate at 2.50 a resolution (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 1za2A
1r0cA Products in the t state of aspartate transcarbamylase: crystal structure of the phosphate and n-carbamyl-l-aspartate ligated enzyme (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 1r0cA
1r0bA Aspartate transcarbamylase (atcase) of escherichia coli: a new crystalline r state bound to pala, or to product analogues phosphate and citrate (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 1r0bA
2hseA Structure of d236a e. Coli aspartate transcarbamoylase in the presence of phosphonoacetamide and l-aspartate at 2.60 a resolution
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2hseA
2a0fA Structure of d236a mutant e. Coli aspartate transcarbamoylase in presence of phosphonoacetamide at 2.90 a resolution (see paper)
94% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2a0fA
5vmqC Structure of the r105a mutant catalytic trimer of escherichia coli aspartate transcarbamoylase at 2.0-a resolution (see paper)
94% identity, 99% coverage: 2:309/311 of query aligns to 1:308/309 of 5vmqC
2at1A Crystal structures of phosphonoacetamide ligated t and phosphonoacetamide and malonate ligated r states of aspartate carbamoyltransferase at 2.8-angstroms resolution and neutral ph (see paper)
93% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 2at1A
1at1A Crystal structures of phosphonoacetamide ligated t and phosphonoacetamide and malonate ligated r states of aspartate carbamoyltransferase at 2.8-angstroms resolution and neutral p H (see paper)
93% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 1at1A
1acmA Arginine 54 in the active site of escherichia coli aspartate transcarbamoylase is critical for catalysis: a site-specific mutagenesis, nmr and x-ray crystallography study (see paper)
92% identity, 100% coverage: 2:311/311 of query aligns to 1:310/310 of 1acmA
1ml4A The pala-liganded aspartate transcarbamoylase catalytic subunit from pyrococcus abyssi (see paper)
52% identity, 96% coverage: 8:306/311 of query aligns to 5:305/307 of 1ml4A
4eknB Structure of the catalytic chain of methanococcus jannaschii aspartate transcarbamoylase in a hexagonal crystal form (see paper)
49% identity, 95% coverage: 8:301/311 of query aligns to 2:296/304 of 4eknB
P20054 Multifunctional protein pyr1-3; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Dictyostelium discoideum (Social amoeba)
44% identity, 98% coverage: 3:307/311 of query aligns to 1918:2223/2225 of P20054
Sites not aligning to the query:
P08955 Multifunctional protein CAD; Carbamoyl phosphate synthetase 2-aspartate transcarbamylase-dihydroorotase; EC 6.3.5.5; EC 3.5.1.2; EC 6.3.4.16; EC 2.1.3.2; EC 3.5.2.3 from Mesocricetus auratus (Golden hamster) (see paper)
43% identity, 97% coverage: 5:306/311 of query aligns to 1921:2223/2225 of P08955
Sites not aligning to the query:
>WP_004206522.1 NCBI__GCF_000025465.1:WP_004206522.1
MANPLYQKHIISINDLSREDLELVLATAAKLKANPQPELLKHKVIASCFFEASTRTRLSF
ETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEFS
GGVPVLNAGDGANQHPTQTLLDLFTIQETQGRLENLNVAMVGDLKYGRTVHSLTQALAKF
SGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSAIDDVMAEVDILYMTRVQKERLDPSE
YANVKAQFVLRAADLEGARANMKVLHPLPRIDEITTDVDKTPHAWYFQQAGNGIFARQAL
LALVLNSELAL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory