Comparing WP_004299043.1 NCBI__GCF_000310185.1:WP_004299043.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
4wjiA Crystal structure of cyclohexadienyl dehydrogenase from sinorhizobium meliloti in complex with NADP and tyrosine
44% identity, 94% coverage: 7:284/295 of query aligns to 7:285/293 of 4wjiA
3ggoA Crystal structure of prephenate dehydrogenase from a. Aeolicus with hpp and nadh (see paper)
40% identity, 87% coverage: 7:264/295 of query aligns to 8:264/285 of 3ggoA
3ggpA Crystal structure of prephenate dehydrogenase from a. Aeolicus in complex with hydroxyphenyl propionate and NAD+ (see paper)
40% identity, 87% coverage: 7:264/295 of query aligns to 8:264/286 of 3ggpA
3gggD The crystal structure of a. Aeolicus prephenate dehydrogenase in complex with tyrosine and NAD+ (see paper)
40% identity, 87% coverage: 7:264/295 of query aligns to 16:272/293 of 3gggD
5uyyA Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with l-tyrosine (see paper)
37% identity, 97% coverage: 6:292/295 of query aligns to 11:293/373 of 5uyyA
Sites not aligning to the query:
6u60B Crystal structure of prephenate dehydrogenase tyra from bacillus anthracis in complex with NAD and l-tyrosine (see paper)
37% identity, 97% coverage: 6:292/295 of query aligns to 3:285/365 of 6u60B
Sites not aligning to the query:
3b1fA Crystal structure of prephenate dehydrogenase from streptococcus mutans (see paper)
31% identity, 94% coverage: 7:283/295 of query aligns to 9:283/286 of 3b1fA
2f1kA Crystal structure of synechocystis arogenate dehydrogenase (see paper)
30% identity, 96% coverage: 6:287/295 of query aligns to 2:279/279 of 2f1kA
2pv7B Crystal structure of chorismate mutase / prephenate dehydrogenase (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution (see paper)
26% identity, 66% coverage: 4:197/295 of query aligns to 9:173/280 of 2pv7B
Sites not aligning to the query:
>WP_004299043.1 NCBI__GCF_000310185.1:WP_004299043.1
MAHIGKLVVCGVGLIGGSFALALRRAGAVERIVGIGRRREVLERACALGVIDEIAEGWAD
ALDGADLVLLAAPVGQTDAILAAMAPHLRPGTIVTDAGSTKRDVVAALRTHLGGALADVV
PAHPIAGAEKSGVEAAFAELYMGRKVVLTPLPESRPEAVQKVRDAWEACGANVVGMTPQE
HDRVFAAVSHLPHLLAFGLVDDLAGRSNAPLLFSHAASGFRDFTRIAGSHPEMWRDICVA
NRVALLEELDAYLGELARLRMMLVEGDGDGLEAVFERARHARNAWAEGLPIRTAE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory