Comparing WP_004304844.1 NCBI__GCF_000310185.1:WP_004304844.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 10 hits to proteins with known functional sites (download)
4lhdA Crystal structure of synechocystis sp. Pcc 6803 glycine decarboxylase (p-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop (see paper)
62% identity, 98% coverage: 12:951/960 of query aligns to 6:949/952 of 4lhdA
Sites not aligning to the query:
Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
58% identity, 97% coverage: 19:953/960 of query aligns to 77:1026/1037 of Q94B78
6i33A Crystal structure of human glycine decarboxylase (p-protein)
56% identity, 98% coverage: 15:954/960 of query aligns to 9:950/950 of 6i33A
6i34B Crystal structure of neanderthal glycine decarboxylase (p-protein)
56% identity, 98% coverage: 15:953/960 of query aligns to 7:954/954 of 6i34B
6i35A Crystal structure of human glycine decarboxylase (p-protein) bound with pyridoxyl-glycine-5'-monophosphate
56% identity, 98% coverage: 15:954/960 of query aligns to 9:953/953 of 6i35A
P15505 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus (Chicken) (see paper)
54% identity, 98% coverage: 15:958/960 of query aligns to 47:993/1004 of P15505
6i33B Crystal structure of human glycine decarboxylase (p-protein)
55% identity, 98% coverage: 15:953/960 of query aligns to 7:925/925 of 6i33B
1wyuB Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in holo form (see paper)
43% identity, 41% coverage: 488:877/960 of query aligns to 46:436/473 of 1wyuB
1wyvA Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in inhibitor-bound form (see paper)
40% identity, 37% coverage: 32:389/960 of query aligns to 10:364/437 of 1wyvA
1wyuA Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in holo form (see paper)
40% identity, 37% coverage: 32:389/960 of query aligns to 10:364/437 of 1wyuA
>WP_004304844.1 NCBI__GCF_000310185.1:WP_004304844.1
MNIHDTRFPATLAQLEQRDDFVGRHVGPDAAETRAMLDVLGLDSLDQLIDKVIPASILSA
APLALPEGRSEPETLALLRAIAGTNRVLRSFIGTGYHDTFTPTVILRNVLENPAWYTAYT
PYQPEISQGRLEALLNFQTMVTDLTGLEIANASLLDEATAAAEAMAFCQRLSKSKSKAFF
VSRDCHPQTIEVVRTRAEPLGFEVIVGDAATELAAHEVFGVLLQYPASTGEVVDHAAIVA
AAHDRKALVVVAADLLALTLLKPPGEFGADVAIGSTQRFGIPMGFGGPHAAYFATRDEHK
RVMPGRVVGVSIDSHGNKAYRLAMQTREQHIRREKATSNICTAQALLAIMASMYACYHGP
AGLTTIARRVHRLTATLAAGLRRLGIDVPTTAFFDTITVRVADAAAVHAAARAAGMNLRE
IDAGTVGIALDETTRRADVEALWAVFGSGVAAPDFDAVESLVQEALPAAQLRSSAFLTHP
VFSAYQSETRMLRYLRSLADKDLALDRTMIPLGSCTMKLNATTEMIPVTWPEFGGLHPFA
PADQTQGYAQLTAELEQMLCACTGYDAVSLQPNAGSQGEYAGLLAIRAYHASRGEGHRDV
CLIPSSAHGTNPATANMAGMRVVVVACDANGNVDVADLRAKAAQHADQLAAIMITYPSIH
GVFETAVREITDIVHAHGGQVYIDGANLNAMVGLCGPGQFGGDVSHLNLHKTFCIPHGGG
GPGVGPIGVKAHLAPFLPGHGSVGLEGIGAVAAAPWGSASILPITWTYITLMGREGLRHA
TVTAILNANYIAQRLEPHYPVLYRGENGLVAHECILDLRPLKDSTGISVDDVAKRLMDFG
FHAPTMSFPVPGTLMIEPTESESKAELDRFCDAMIAIREEIAKVASGEYDPRDNPLVNAP
HTAEAIAGEWSHPYSREVAAYPVASLRGNKYWSPVGRVDNVYGDRNLVCACPPLSDYEQA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory