Comparing WP_004312079.1 NCBI__GCF_000310185.1:WP_004312079.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
27% identity, 18% coverage: 215:371/868 of query aligns to 60:211/427 of 8b01B
Sites not aligning to the query:
>WP_004312079.1 NCBI__GCF_000310185.1:WP_004312079.1
MASPEKQEHGFELTDEQLRQIVAEADTGGRKPTGWPARLIVLVALAWSLMQLWIASPLPF
SLGMFVFNDTEARSIHLALAVFLAFLAYPALKRSPRDRIPLGDWVLAAVGAFCMGYLFLF
YRELAARPGLPTTTDLAVAVCGLILLLEAARRALGLPMVVLSVVFIGYVFLGPYMPEMIA
HRGASLAKGMSHLWLTTEGVFGVALGVSTSFIFLFVLFGSLLETAGAGNYFIKSAISLLG
HLRGGPAKAAVVASASTGLISGSSIANVVTTGTFTIPLMKRVGYAPKKAAAVEAAASVDG
QIMPPVMGAAAFLMVEYVGIPYTEVIKHAFLPALISYIALFYVVHLEALKADIRGLPRRV
TKSAGHRLLSFGLTVSGLIVLAGAVYYGMGWIKALAGDASAIIVAVLMFGCYIGLLWYAT
RHPELHMDDPSSPLTELPETGPTLKTGLYYLLPVVALIWNLMVEELSPALSAFWATLFMI
FILVTQRPLKAIFRNTGNVGEATRQGFADLHTGLVTGARNMIGIGIATATAGIIVGTVTL
TGVGLVLTEFVEAVSGGNLMVMLVMVAVICLILGMGLPTTANYIVVSTLMAPVVVEVGAQ
SGLLVPLIAVHMFVFYFGLMADVTPPVGLASYAAAGIARCDPIAAGVQAFLYSMRTAILP
FMFIFNTQLLMIGVDSVWLFALTVSSAIVANLMFAAATQGWFITRNRVHESILLLLVTFT
LFRPGFWMDMLYPPYQELPASELTRLVEEAPRNDNLRIWVEGISLEGEEVSKGMLLPLGD
TAPSARERLGRVGLTLMSLGDEVQVAAVRFGSQSEKLGLEQGYKIARIEVPSVDRPSREW
MFVPALALLGFVWFAQTRRARRQQPTRA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory