SitesBLAST
Comparing WP_004313313.1 NCBI__GCF_000310185.1:WP_004313313.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9LKJ1 3-hydroxyisobutyryl-CoA hydrolase 1; CoA-thioester hydrolase CHY1; EC 3.1.2.-; EC 3.1.2.4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
40% identity, 99% coverage: 5:344/345 of query aligns to 4:353/378 of Q9LKJ1
- G70 (= G72) mutation to S: Loss of activity.
- E142 (= E143) mutation to A: Loss of activity.
- D150 (= D151) mutation to G: Reduced activity.
4hdtA Crystal structure of a carnitinyl-coa dehydratase from mycobacterium thermoresistibile (see paper)
40% identity, 97% coverage: 11:344/345 of query aligns to 3:328/340 of 4hdtA
- active site: G64 (= G72), I69 (≠ L77), W84 (≠ F92), Y88 (= Y96), G112 (= G120), G115 (= G123), E135 (= E143), P142 (= P150), D143 (= D151), R283 (= R295)
- binding zinc ion: H28 (≠ L36), E42 (≠ A50), E57 (= E65), E79 (= E87), H93 (≠ R101), H185 (≠ S193)
Sites not aligning to the query:
3bptA Crystal structure of human beta-hydroxyisobutyryl-coa hydrolase in complex with quercetin
35% identity, 98% coverage: 6:344/345 of query aligns to 1:345/362 of 3bptA
- active site: G67 (= G72), P84 (≠ V89), R88 (≠ D93), G115 (= G120), G118 (= G123), E138 (= E143), D146 (= D151)
- binding (2r)-3-hydroxy-2-methylpropanoic acid: G66 (= G71), G67 (= G72), I69 (≠ V74), E90 (= E95), G114 (= G119), G115 (= G120), E138 (= E143), D146 (= D151), V147 (= V152)
- binding 3,5,7,3',4'-pentahydroxyflavone: F25 (≠ V30), L26 (= L31), A28 (= A33), G66 (= G71), G67 (= G72), I69 (≠ V74), P137 (= P142), I141 (= I146), L319 (= L318)
5zaiC Crystal structure of 3-hydroxypropionyl-coa dehydratase from metallosphaera sedula (see paper)
33% identity, 50% coverage: 23:194/345 of query aligns to 17:185/259 of 5zaiC
- active site: A65 (≠ G72), F70 (≠ L77), S82 (≠ D93), R86 (≠ Y96), G110 (= G120), E113 (≠ G123), P132 (= P142), E133 (= E143), I138 (= I148), P140 (= P150), G141 (≠ D151)
- binding coenzyme a: K24 (≠ V30), L25 (= L31), A63 (= A70), G64 (= G71), A65 (≠ G72), D66 (= D73), I67 (≠ V74), P132 (= P142), R166 (≠ T175)
Sites not aligning to the query:
2dubA Enoyl-coa hydratase complexed with octanoyl-coa (see paper)
32% identity, 50% coverage: 20:192/345 of query aligns to 16:178/254 of 2dubA
- active site: A67 (≠ G72), M72 (≠ L80), S82 (≠ C90), G105 (= G120), E108 (≠ G123), P127 (= P142), E128 (= E143), T133 (≠ I148), P135 (= P150), G136 (≠ D151)
- binding octanoyl-coenzyme a: K25 (≠ A29), A26 (≠ V30), L27 (= L31), A29 (= A33), A65 (= A70), A67 (≠ G72), D68 (= D73), I69 (≠ V74), K70 (≠ R75), G105 (= G120), E108 (≠ G123), P127 (= P142), E128 (= E143), G136 (≠ D151), A137 (≠ V152)
Sites not aligning to the query:
1ey3A Structure of enoyl-coa hydratase complexed with the substrate dac-coa (see paper)
33% identity, 50% coverage: 20:192/345 of query aligns to 15:182/258 of 1ey3A
- active site: A66 (≠ G72), M71 (≠ L80), S81 (≠ F92), L85 (≠ Y96), G109 (= G120), E112 (≠ G123), P131 (= P142), E132 (= E143), T137 (≠ I148), P139 (= P150), G140 (≠ D151)
- binding 4-(n,n-dimethylamino)cinnamoyl-coa: K24 (≠ A29), L26 (= L31), A28 (= A33), A64 (= A70), G65 (= G71), A66 (≠ G72), D67 (= D73), I68 (≠ V74), L85 (≠ Y96), W88 (≠ D99), G109 (= G120), P131 (= P142), L135 (≠ I146), G140 (≠ D151)
Sites not aligning to the query:
1dubA 2-enoyl-coa hydratase, data collected at 100 k, ph 6.5 (see paper)
33% identity, 50% coverage: 20:192/345 of query aligns to 17:184/260 of 1dubA
- active site: A68 (≠ G72), M73 (≠ L80), S83 (≠ F92), L87 (≠ Y96), G111 (= G120), E114 (≠ G123), P133 (= P142), E134 (= E143), T139 (≠ I148), P141 (= P150), G142 (≠ D151)
- binding acetoacetyl-coenzyme a: K26 (≠ A29), A27 (≠ V30), L28 (= L31), A30 (= A33), A66 (= A70), A68 (≠ G72), D69 (= D73), I70 (≠ V74), Y107 (≠ V116), G110 (= G119), G111 (= G120), E114 (≠ G123), P133 (= P142), E134 (= E143), L137 (≠ I146), G142 (≠ D151)
Sites not aligning to the query:
1mj3A Crystal structure analysis of rat enoyl-coa hydratase in complex with hexadienoyl-coa (see paper)
32% identity, 50% coverage: 20:192/345 of query aligns to 17:182/258 of 1mj3A
- active site: A68 (≠ G72), M73 (≠ L77), S83 (≠ E87), L85 (≠ V89), G109 (= G120), E112 (≠ G123), P131 (= P142), E132 (= E143), T137 (≠ I148), P139 (= P150), G140 (≠ D151)
- binding hexanoyl-coenzyme a: K26 (≠ A29), A27 (≠ V30), L28 (= L31), A30 (= A33), A66 (= A70), G67 (= G71), A68 (≠ G72), D69 (= D73), I70 (≠ V74), G109 (= G120), P131 (= P142), E132 (= E143), L135 (≠ I146), G140 (≠ D151)
Sites not aligning to the query:
P14604 Enoyl-CoA hydratase, mitochondrial; mECH; mECH1; Enoyl-CoA hydratase 1; ECHS1; Short-chain enoyl-CoA hydratase; SCEH; EC 4.2.1.17; EC 5.3.3.8 from Rattus norvegicus (Rat) (see 3 papers)
33% identity, 50% coverage: 20:192/345 of query aligns to 47:214/290 of P14604
- E144 (≠ G123) mutation to D: Reduces activity 50-fold.; mutation to Q: Reduces activity 3300-fold.
- E164 (= E143) mutation to D: Reduces activity 1250-fold.; mutation to Q: Reduces activity 330000-fold.
Sites not aligning to the query:
- 1:29 modified: transit peptide, Mitochondrion
2hw5C The crystal structure of human enoyl-coenzyme a (coa) hydratase short chain 1, echs1
32% identity, 51% coverage: 18:192/345 of query aligns to 15:184/260 of 2hw5C
- active site: A68 (≠ G72), M73 (≠ L77), S83 (≠ F92), L87 (≠ Y96), G111 (= G120), E114 (≠ G123), P133 (= P142), E134 (= E143), T139 (≠ I148), P141 (= P150), G142 (≠ D151)
- binding crotonyl coenzyme a: K26 (≠ A29), A27 (≠ V30), L28 (= L31), A30 (= A33), K62 (≠ R66), I70 (≠ V74), F109 (≠ M118)
Sites not aligning to the query:
3q0jC Crystal structure of the mycobacterium tuberculosis crotonase in complex with the inhibitor acetoacetylcoa
31% identity, 59% coverage: 11:214/345 of query aligns to 5:204/255 of 3q0jC
- active site: A65 (≠ G72), M70 (≠ L77), T80 (≠ F92), F84 (≠ Y96), G108 (= G120), E111 (≠ G123), P130 (= P142), E131 (= E143), V136 (≠ I148), P138 (= P150), G139 (≠ D151)
- binding acetoacetyl-coenzyme a: Q23 (≠ A29), A24 (≠ V30), L25 (= L31), A27 (= A33), A63 (= A70), G64 (= G71), A65 (≠ G72), D66 (= D73), I67 (≠ V74), K68 (≠ R75), M70 (≠ L77), F84 (≠ Y96), G107 (= G119), G108 (= G120), E111 (≠ G123), P130 (= P142), E131 (= E143), P138 (= P150), G139 (≠ D151), M140 (≠ V152)
Sites not aligning to the query:
3q0gC Crystal structure of the mycobacterium tuberculosis crotonase bound to a reaction intermediate derived from crotonyl coa
31% identity, 59% coverage: 11:214/345 of query aligns to 5:204/255 of 3q0gC
- active site: A65 (≠ G72), M70 (≠ L77), T80 (≠ F92), F84 (≠ Y96), G108 (= G120), E111 (≠ G123), P130 (= P142), E131 (= E143), V136 (≠ I148), P138 (= P150), G139 (≠ D151)
- binding coenzyme a: L25 (= L31), A63 (= A70), I67 (≠ V74), K68 (≠ R75), Y104 (≠ V116), P130 (= P142), E131 (= E143), L134 (≠ I146)
Sites not aligning to the query:
3h81A Crystal structure of enoyl-coa hydratase from mycobacterium tuberculosis (see paper)
31% identity, 59% coverage: 11:214/345 of query aligns to 4:203/256 of 3h81A
- active site: A64 (≠ G72), M69 (≠ L77), T79 (≠ F92), F83 (≠ Y96), G107 (= G120), E110 (≠ G123), P129 (= P142), E130 (= E143), V135 (≠ I148), P137 (= P150), G138 (≠ D151)
Sites not aligning to the query:
3q0gD Crystal structure of the mycobacterium tuberculosis crotonase bound to a reaction intermediate derived from crotonyl coa
31% identity, 59% coverage: 11:214/345 of query aligns to 4:199/250 of 3q0gD
- active site: A64 (≠ G72), M69 (≠ L77), T75 (≠ V89), F79 (≠ Y96), G103 (= G120), E106 (≠ G123), P125 (= P142), E126 (= E143), V131 (≠ I148), P133 (= P150), G134 (≠ D151)
Sites not aligning to the query:
6z1pBI mS93 (see paper)
32% identity, 51% coverage: 11:187/345 of query aligns to 23:201/1413 of 6z1pBI
- active site: T85 (≠ G72), S134 (≠ G120), E157 (= E143), D165 (= D151)
- binding : Y41 (≠ A29), K42 (≠ V30), Q43 (≠ L31), T45 (≠ A33), D47 (= D35), H49 (≠ A37), K83 (≠ A70), T85 (≠ G72), D86 (= D73), F87 (≠ V74), K88 (≠ R75), K92 (≠ E79), L130 (≠ V116), K152 (≠ R138)
Sites not aligning to the query:
6iunB Crystal structure of enoyl-coa hydratase (ech) from ralstonia eutropha h16 in complex with NAD
29% identity, 57% coverage: 18:214/345 of query aligns to 8:181/692 of 6iunB
Sites not aligning to the query:
- active site: 248, 407, 428, 440, 478
- binding nicotinamide-adenine-dinucleotide: 300, 301, 302, 321, 322, 365, 377, 378, 380, 384, 388, 405, 407
4izdA Crystal structure of dmdd e121a in complex with mmpa-coa (see paper)
32% identity, 55% coverage: 6:196/345 of query aligns to 5:194/253 of 4izdA
- active site: L70 (≠ G72), H75 (≠ L77), C89 (≠ Y91), H93 (≠ E95), G117 (= G120), A120 (≠ G123), E140 (= E143), G148 (≠ D151)
- binding 3-methylmercaptopropionate-CoA (MMPA-CoA): D29 (≠ A29), K30 (≠ V30), R31 (≠ L31), A33 (= A33), A68 (= A70), L70 (≠ G72), D71 (= D73), L72 (≠ V74)
Sites not aligning to the query:
4izcB Crystal structure of dmdd e121a in complex with mta-coa (see paper)
32% identity, 55% coverage: 6:196/345 of query aligns to 5:194/266 of 4izcB
- active site: L70 (≠ G72), H75 (≠ L77), C89 (≠ Y91), H93 (≠ E95), G117 (= G120), A120 (≠ G123), E140 (= E143), G148 (≠ D151)
- binding methylthioacryloyl-CoA: D29 (≠ A29), K30 (≠ V30), R31 (≠ L31), A33 (= A33), A68 (= A70), L70 (≠ G72), D71 (= D73), L72 (≠ V74), W92 (≠ E94), G117 (= G120), P139 (= P142), E140 (= E143), R143 (≠ I146), G148 (≠ D151)
Sites not aligning to the query:
Q5LLW6 Methylthioacryloyl-CoA hydratase; EC 4.2.1.155 from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
32% identity, 55% coverage: 6:196/345 of query aligns to 6:195/267 of Q5LLW6
- K31 (≠ V30) binding 3-(methylsulfanyl)acryloyl-CoA
- R32 (≠ L31) binding 3-(methylsulfanyl)acryloyl-CoA
- A69 (= A70) binding 3-(methylsulfanyl)acryloyl-CoA
- L71 (≠ G72) binding 3-(methylsulfanyl)acryloyl-CoA
- L73 (≠ V74) binding 3-(methylsulfanyl)acryloyl-CoA
- G118 (= G120) binding 3-(methylsulfanyl)acryloyl-CoA
- E121 (≠ G123) active site, Nucleophile; mutation to A: Abolishes catalytic activity.
- E141 (= E143) active site, Proton acceptor; mutation to A: Abolishes catalytic activity.
- R144 (≠ I146) binding 3-(methylsulfanyl)acryloyl-CoA
- G149 (≠ D151) binding 3-(methylsulfanyl)acryloyl-CoA
P21177 Fatty acid oxidation complex subunit alpha; EC 4.2.1.17; EC 5.1.2.3; EC 5.3.3.8; EC 1.1.1.35 from Escherichia coli (strain K12) (see 2 papers)
31% identity, 51% coverage: 16:191/345 of query aligns to 13:188/729 of P21177
- G116 (= G120) mutation to F: Absence of both enoyl-CoA hydratase and 3-hydroxyacyl-CoA epimerase activities. Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase is only slightly affected.
Sites not aligning to the query:
- 322 G→A: 10-fold increase in KM for NADH.
- 450 active site, For 3-hydroxyacyl-CoA dehydrogenase activity; mutation H->A,Q: Almost complete loss of 3-hydroxyacyl-CoA dehydrogenase activity.
Query Sequence
>WP_004313313.1 NCBI__GCF_000310185.1:WP_004313313.1
MLLPETASPANVLVDLIDGVGVLTLNRPAVLNALDLATVRALTRQLDAWAHDPAIRAVLL
RGSGERAFCAGGDVRALYELQRQGAPELVCYFDEEYALDCRIHRYPKPTIALMDGVVMGG
GMGISQGCTHRLVTERTRMAMPETAIGIFPDVGASYFLSRLPPALGVYIGVVGDTLSGAD
AVASGLADRLVPSALFADLRALIATIDAEAWPAAPTQTKIPSLLTAPVLAAVERHFGHGS
VEEILAALAGETDPLLRPWVERTQGLLAQRSPLMLCVTFAQLQRGRRLGLEDCFRMERTM
MEYSFAHGDTMEGIRALLIDKDRNPRWRHRTVEEVGREEVEAFFG
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory