Comparing WP_004318960.1 NCBI__GCF_000310185.1:WP_004318960.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand. (see paper)
42% identity, 84% coverage: 55:344/346 of query aligns to 11:302/303 of 4p9kA
4pakA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
42% identity, 84% coverage: 55:344/346 of query aligns to 12:303/304 of 4pakA
4pdhA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
41% identity, 83% coverage: 55:341/346 of query aligns to 9:297/301 of 4pdhA
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
39% identity, 85% coverage: 47:341/346 of query aligns to 3:297/303 of 4pddA
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
36% identity, 86% coverage: 47:344/346 of query aligns to 7:306/310 of 7bbrA
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
36% identity, 86% coverage: 47:344/346 of query aligns to 6:305/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
36% identity, 86% coverage: 47:344/346 of query aligns to 6:305/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
36% identity, 86% coverage: 47:344/346 of query aligns to 6:305/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
36% identity, 86% coverage: 47:344/346 of query aligns to 6:305/310 of 7bcnA
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
37% identity, 75% coverage: 66:325/346 of query aligns to 22:280/304 of 4xeqB
Sites not aligning to the query:
4nq8B Crystal structure of a trap periplasmic solute binding protein from bordetella bronchispeptica (bb3421), target efi-510039, with density modeled as pantoate (see paper)
35% identity, 85% coverage: 48:341/346 of query aligns to 4:296/301 of 4nq8B
8te9B Crystal structure of an isethionate bound substrate binding protein (isep) from an isethionate trap transporter
33% identity, 86% coverage: 44:341/346 of query aligns to 2:304/309 of 8te9B
4n8yA Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
33% identity, 78% coverage: 71:341/346 of query aligns to 26:297/300 of 4n8yA
Sites not aligning to the query:
Q16BC9 Solute-binding protein RD1_1052 from Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans) (see paper)
34% identity, 77% coverage: 44:310/346 of query aligns to 27:294/325 of Q16BC9
4pcdA Crystal structure of a trap periplasmic solute binding protein from roseobacter denitrificans och 114 (rd1_1052, target efi-510238) with bound l-galactonate (see paper)
34% identity, 77% coverage: 44:310/346 of query aligns to 3:270/300 of 4pcdA
4pc9A Crystal structure of a trap periplasmic solute binding protein from rosenbacter denitrificans och 114 (rd1_1052, target efi-510238) with bound d-mannonate (see paper)
34% identity, 77% coverage: 44:310/346 of query aligns to 3:270/300 of 4pc9A
4p3lA Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085, with bound glucuronate, spg p6122 (see paper)
33% identity, 77% coverage: 62:327/346 of query aligns to 17:282/303 of 4p3lA
Sites not aligning to the query:
4ovqA Crystal structure of a trap periplasmic solute binding protein from roseobacter denitrificans, target efi-510230, with bound beta-d- glucuronate (see paper)
34% identity, 76% coverage: 66:327/346 of query aligns to 21:282/302 of 4ovqA
Sites not aligning to the query:
4pf8A Crystal structure of a trap periplasmic solute binding protein from sulfitobacter sp. Nas-14.1 (target efi-510299) with bound beta-d- galacturonate (see paper)
33% identity, 77% coverage: 63:327/346 of query aligns to 17:281/300 of 4pf8A
Sites not aligning to the query:
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
30% identity, 78% coverage: 73:341/346 of query aligns to 31:300/304 of 4x8rA
Sites not aligning to the query:
>WP_004318960.1 NCBI__GCF_000310185.1:WP_004318960.1
MSNQPATPLRRRILATGLALAAFALAGCSGEQKGTQPATTATNQKLVIKVGHAATESNTG
HKGLVEFNRLLGEKTGGRISLEIYPNSQLGSERELIEAVQLGSVGMTFVSSAPLGGFKKE
FFALDLPFVFKDRPTVYKVLDGEPGQYLLKSLQDINIQGLGFWENGFRQLSNSKVAVKTP
DDLKGIKMRTMENEVHLAAWKELGANPAPLAFGELFTALQQGTFDAQETPINLFRDMKFF
EVQKFITKTGHLYSPFVILMSKPLYDGLSEADKQAMAEAFEAAKAYQRDLAQKSDAEAEA
QMTGITFTELSDAEKEAFRAKMGPVYDLVKKKAGEEIVKKVLQATN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory