Comparing WP_004511427.1 NCBI__GCF_000012925.1:WP_004511427.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6zngF Maeb full-length acetyl-coa bound state (see paper)
56% identity, 99% coverage: 5:750/752 of query aligns to 6:744/753 of 6zngF
P76558 NADP-dependent malic enzyme; NADP-ME; EC 1.1.1.40 from Escherichia coli (strain K12) (see paper)
53% identity, 99% coverage: 4:751/752 of query aligns to 6:756/759 of P76558
6zn4A Maeb malic enzyme domain apoprotein (see paper)
70% identity, 53% coverage: 5:405/752 of query aligns to 5:405/406 of 6zn4A
6zn7A Maeb malic enzyme domain apoprotein (see paper)
70% identity, 53% coverage: 5:405/752 of query aligns to 5:405/405 of 6zn7A
5ceeA Malic enzyme from candidatus phytoplasma aywb in complex with NAD and mg2+ (see paper)
48% identity, 50% coverage: 32:404/752 of query aligns to 29:387/387 of 5ceeA
2dvmA NAD complex structure of ph1275 protein from pyrococcus horikoshii
45% identity, 55% coverage: 4:416/752 of query aligns to 2:408/438 of 2dvmA
2haeD Crystal structure of a putative malic enzyme (malate oxidoreductase)
45% identity, 52% coverage: 6:397/752 of query aligns to 1:373/373 of 2haeD
2haeB Crystal structure of a putative malic enzyme (malate oxidoreductase)
45% identity, 52% coverage: 6:397/752 of query aligns to 1:373/373 of 2haeB
2a9fA Crystal structure of a putative malic enzyme ((s)-malate:nad+ oxidoreductase (decarboxylating))
48% identity, 45% coverage: 17:356/752 of query aligns to 18:355/383 of 2a9fA
6ioxA Crystal structure of porphyromonas gingivalis phosphotransacetylase in complex with acetyl-coa (see paper)
40% identity, 42% coverage: 431:744/752 of query aligns to 11:329/339 of 6ioxA
1xcoD Crystal structure of a phosphotransacetylase from bacillus subtilis in complex with acetylphosphate (see paper)
41% identity, 41% coverage: 441:749/752 of query aligns to 20:324/325 of 1xcoD
Q8ZND6 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.222; EC 2.3.1.8 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
34% identity, 46% coverage: 407:749/752 of query aligns to 357:709/714 of Q8ZND6
Sites not aligning to the query:
2af3C Phosphotransacetylase from methanosarcina thermophila soaked with coenzyme a (see paper)
32% identity, 43% coverage: 428:749/752 of query aligns to 4:327/332 of 2af3C
P38503 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Methanosarcina thermophila (see 2 papers)
32% identity, 43% coverage: 428:749/752 of query aligns to 5:328/333 of P38503
Sites not aligning to the query:
6w49A Trypanosoma cruzi malic enzyme in complex with inhibitor (mec010) (see paper)
27% identity, 43% coverage: 33:354/752 of query aligns to 82:481/543 of 6w49A
6w59A Trypanosoma cruzi malic enzyme in complex with inhibitor (mec063) (see paper)
27% identity, 43% coverage: 33:354/752 of query aligns to 82:481/544 of 6w59A
6w56A Trypanosoma cruzi malic enzyme in complex with inhibitor (mec062) (see paper)
27% identity, 43% coverage: 33:354/752 of query aligns to 82:481/544 of 6w56A
6w29A Trypanosoma cruzi malic enzyme in complex with inhibitor (mec013) (see paper)
27% identity, 43% coverage: 33:354/752 of query aligns to 84:483/545 of 6w29A
6w57A Trypanosoma cruzi malic enzyme in complex with inhibitor (mec069) (see paper)
27% identity, 43% coverage: 33:354/752 of query aligns to 82:479/542 of 6w57A
6w53A Trypanosoma cruzi malic enzyme in complex with inhibitor (mec070) (see paper)
30% identity, 35% coverage: 93:354/752 of query aligns to 190:477/540 of 6w53A
Sites not aligning to the query:
>WP_004511427.1 NCBI__GCF_000012925.1:WP_004511427.1
MSKKQDALEYHSSGRKGKIEVVASKPCLTQRDLSLAYSPGVAEPCLEIEKNPEDAYKYTA
KGNLVAVVSNGTAVLGLGNIGALAGKPVMEGKGVLFKRFADIDVFDIELNTENPDEVIKA
CQLLEPTFGGINLEDIKAPECFYIEEELKKTMNIPVFHDDQHGTAIISAAALTNALEIID
KKIEDIRIVVNGAGASAIACANLAISLGVKKENLVMCDTKGVIYKGRTEGMNKYKERFAV
DTPLRTLEEAATGADVLYGLSSKGAFTPEIVRKLAKNPIIFAMANPDPEISPEEAHAVRG
DVLIATGRSDYPNQVNNVLGFPFIFRGALDVRATTINEEMKKAAVFALAELAREECPDSV
CRAYGNVKFSFGRDYIIPKPFDPRALLRVAPAVAKAAMESGVARQPIEDMEKYVEHLESL
QGKAKEALRMIINKAKADPRKLVFPEGDNEKILRATQILIEEEIAKPILIGNQDKIREKM
AELGLDFNGSVQIIDPATFERSEEYAQELFSLRQRKGLTLTEARRIMTRKSRTHFGCMMV
HMGDADCLLSGIDTHYPETIRPALEVIGRQPGLSSVHGLYMMVFKKGIYFMADTTVCIEP
TPEELAETAILAAEKVRMLDIEPTIAMLSFSNFGSVNHPQAQKVRRAVEIVKQKAPDLIV
DGEMQSDTAVVSEMLQKSFSFASLKEAANVLIFPDLNSGNICYKLLHHLGGAEAIGPILM
GMQKPVHVLQRGDDVSDIVNMAALAVVDAQNS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory