SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_005344106.1 NCBI__GCF_000173975.1:WP_005344106.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
41% identity, 80% coverage: 16:93/97 of query aligns to 13:90/564 of 3al0C

query
sites
3al0C
L
 
L
A
 
A
K
 
R
L
 
L
E
 
E
L
 
L
S
 
S
D
 
E
E
 
D
E
 
Q
K
 
R
E
 
E
Q
 
S
A
 
L
K
 
M
K
 
K
D
 
D
M
 
F
A
 
Q
N
 
E
M
 
I
L
 
L
D
 
D
Y
 
Y
I
 
V
D
 
E
T
 
L
L
 
L
N
 
N
E
 
E
L
 
V
D
 
D
T
 
V
S
 
E
G
 
G
V
 
V
E
 
E
P
 
P
M
 
M
S
 
Y
H
 
T
V
 
-
F
 
-
P
 
P
V
 
V
N
 
E
N
 
D
V
 
S
F
 
A
R
 
K
E
 
-
D
 
-
V
 
-
V
 
L
T
 
R
N
 
K
G
 
G
D
 
D
D
 
P
-
 
R
-
 
F
-
 
F
-
 
E
-
 
M
R
 
R
E
 
D
E
 
L
I
 
I
L
 
K
A
 
K
N
 
N
A
 
F
P
 
P
E
 
E
A
 
E
K
 
K
E
 
D
G
 
G
A
 
H
F
 
I
V
 
K
V
 
V
P
 
P

Sites not aligning to the query:

Query Sequence

>WP_005344106.1 NCBI__GCF_000173975.1:WP_005344106.1
MANIISDETIEYVGILAKLELSDEEKEQAKKDMANMLDYIDTLNELDTSGVEPMSHVFPV
NNVFREDVVTNGDDREEILANAPEAKEGAFVVPKTFD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory