SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_005344106.1 NCBI__GCF_000173975.1:WP_005344106.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
41% identity, 80% coverage: 16:93/97 of query aligns to 13:90/564 of 3al0C

query
sites
3al0C

L

L

A

A

K

R

L

L

E

E

L

L

S

S

D

E

E

D

E

Q

K

R

E

E

Q

S

A

L

K

M

K

K

D

D

M

F

A

Q

N

E

M

I

L

L

D

D

Y

Y

I

V

D

E

T

L

L

L

N

N

E

E

L

V

D

D

T

V

S

E

G

G

V

V

E

E

P

P

M

M

S

Y

H

T

V

-

F

-

P

P

V

V

N

E

N

D

V

S

F

A

R

K

E

-

D

-

V

-

V

L

T

R

N

K

G

G

D

D

D

P

-

R

-

F

-

F

-

E

-

M

R

R

E

D

E

L

I

I

L

K

A

K

N

N

A

F

P

P

E

E

A

E

K

K

E

D

G

G

A

H

F

I

V

K

V

V

P

P

Sites not aligning to the query:

active site: 110, 335
binding o5'-(l-glutamyl-sulfamoyl)-adenosine: 106, 108, 109, 118, 122, 142, 276, 294, 295, 297, 298, 324, 325, 333
binding : 144, 145, 148, 208, 213, 252, 255, 266, 269, 270, 276, 297, 298, 299, 300, 301, 304, 330, 332, 363, 364, 365, 370, 387, 389, 391, 392, 397, 400, 407, 446, 447, 453, 457, 509, 520, 524, 527, 535, 536, 538, 539

Query Sequence

>WP_005344106.1 NCBI__GCF_000173975.1:WP_005344106.1
MANIISDETIEYVGILAKLELSDEEKEQAKKDMANMLDYIDTLNELDTSGVEPMSHVFPV
NNVFREDVVTNGDDREEILANAPEAKEGAFVVPKTFD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory