Comparing WP_005348813.1 NCBI__GCF_000173975.1:WP_005348813.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
34% identity, 95% coverage: 16:383/389 of query aligns to 1:372/380 of 2x5dD
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
37% identity, 99% coverage: 1:384/389 of query aligns to 1:386/393 of 6l1lB
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
37% identity, 99% coverage: 1:384/389 of query aligns to 1:386/392 of 6l1oB
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
37% identity, 99% coverage: 1:384/389 of query aligns to 1:385/393 of 6l1nA
2o1bA Structure of aminotransferase from staphylococcus aureus
31% identity, 91% coverage: 34:388/389 of query aligns to 21:374/376 of 2o1bA
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
27% identity, 97% coverage: 6:384/389 of query aligns to 3:366/370 of Q58097
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
27% identity, 89% coverage: 32:379/389 of query aligns to 25:375/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
27% identity, 89% coverage: 32:379/389 of query aligns to 25:375/388 of 1gd9A
1xi9C Alanine aminotransferase from pyrococcus furiosus pfu-1397077-001
29% identity, 90% coverage: 25:375/389 of query aligns to 21:378/393 of 1xi9C
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
25% identity, 94% coverage: 20:384/389 of query aligns to 25:380/384 of 1o4sB
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
24% identity, 93% coverage: 22:384/389 of query aligns to 24:393/402 of P14909
Sites not aligning to the query:
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
25% identity, 93% coverage: 20:379/389 of query aligns to 19:375/385 of Q56232
Sites not aligning to the query:
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
25% identity, 93% coverage: 20:379/389 of query aligns to 19:375/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
25% identity, 93% coverage: 20:379/389 of query aligns to 19:375/382 of 1bjwA
5wmhA Arabidopsis thaliana prephenate aminotransferase (see paper)
23% identity, 97% coverage: 8:385/389 of query aligns to 5:395/399 of 5wmhA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
25% identity, 93% coverage: 20:379/389 of query aligns to 19:375/382 of 1b5oA
5wmlA Arabidopsis thaliana prephenate aminotransferase mutant- k306a (see paper)
23% identity, 99% coverage: 1:385/389 of query aligns to 1:396/404 of 5wmlA
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
28% identity, 87% coverage: 30:369/389 of query aligns to 27:375/393 of 3jtxB
1j32A Aspartate aminotransferase from phormidium lapideum
23% identity, 98% coverage: 6:388/389 of query aligns to 4:388/388 of 1j32A
5wmiA Arabidopsis thaliana prephenate aminotransferase mutant- t84v (see paper)
24% identity, 92% coverage: 30:385/389 of query aligns to 27:395/402 of 5wmiA
Sites not aligning to the query:
>WP_005348813.1 NCBI__GCF_000173975.1:WP_005348813.1
MNFEPAEKMKNFEAGIFQILDEKKKELQKQGKKIYNFSVGTPDFETPECVMKAVSEACLH
PENYHYSLGETDELLDALAARYKNRYNTDIAKNEIMSVYGSQEGMAHIFLPLINPGDIVL
LPNPGYPIFSTGAFIAQSNQWFYPLTEENNYLPDFDAIPADVKKAAKVMVVSYPANPICK
TAPDEFYEKLITFARENNILIIHDNAYSDIIYDGREGKSFLSFKGAKEVGVEFYSLSKSY
NYTGARMSFVIGNAQVIEVFKRFRSQIDYGIFLPVQAGAVAALKSDDAAVQEQCKKYQER
RDALCEGLREIGWNIPDSEGTMFAWGPLPDGYTNSNEFVMELMEKTGVICTPGSSFGSLG
EGYVRFALVLPPEEIKKAIASIKESGILK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory