Comparing WP_005453705.1 NCBI__GCF_000244975.1:WP_005453705.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 3 papers)
25% identity, 98% coverage: 6:356/358 of query aligns to 1:371/377 of P44514
5vo3A Crystal structure of dape in complex with the products (succinic acid and diaminopimelic acid) (see paper)
25% identity, 98% coverage: 6:356/358 of query aligns to 5:375/380 of 5vo3A
7lgpB Dape enzyme from shigella flexneri
26% identity, 97% coverage: 11:356/358 of query aligns to 8:372/377 of 7lgpB
8uw6B Acetylornithine deacetylase from escherichia coli, di-zinc form. (see paper)
25% identity, 96% coverage: 11:352/358 of query aligns to 7:371/381 of 8uw6B
Sites not aligning to the query:
7t1qA Crystal structure of the succinyl-diaminopimelate desuccinylase (dape) from acinetobacter baumannii in complex with succinic acid
26% identity, 87% coverage: 44:356/358 of query aligns to 39:371/377 of 7t1qA
4pqaA Crystal structure of succinyl-diaminopimelate desuccinylase from neisseria meningitidis mc58 in complex with the inhibitor captopril (see paper)
27% identity, 82% coverage: 66:357/358 of query aligns to 62:372/375 of 4pqaA
4o23A Crystal structure of mono-zinc form of succinyl diaminopimelate desuccinylase from neisseria meningitidis mc58 (see paper)
27% identity, 82% coverage: 66:357/358 of query aligns to 62:372/376 of 4o23A
2f7vA Structure of acetylcitrulline deacetylase complexed with one co (see paper)
28% identity, 90% coverage: 38:358/358 of query aligns to 38:359/360 of 2f7vA
Q8P8J5 N-acetyl-L-citrulline deacetylase; ACDase; Acetylcitrulline deacetylase; EC 3.5.1.- from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) (see paper)
28% identity, 90% coverage: 38:358/358 of query aligns to 37:364/366 of Q8P8J5
5xoyA Crystal structure of lysk from thermus thermophilus in complex with lysine (see paper)
28% identity, 96% coverage: 9:353/358 of query aligns to 2:331/341 of 5xoyA
1cg2A Carboxypeptidase g2 (see paper)
25% identity, 70% coverage: 16:267/358 of query aligns to 24:279/389 of 1cg2A
Sites not aligning to the query:
P06621 Carboxypeptidase G2; CPDG2; Folate hydrolase G2; Glutamate carboxypeptidase; Pteroylmonoglutamic acid hydrolase G2; Glucarpidase; EC 3.4.17.11 from Pseudomonas sp. (strain RS-16) (see paper)
25% identity, 70% coverage: 16:267/358 of query aligns to 49:304/415 of P06621
Sites not aligning to the query:
3pfoA Crystal structure of a putative acetylornithine deacetylase (rpa2325) from rhodopseudomonas palustris cga009 at 1.90 a resolution
26% identity, 55% coverage: 14:210/358 of query aligns to 58:245/426 of 3pfoA
Sites not aligning to the query:
>WP_005453705.1 NCBI__GCF_000244975.1:WP_005453705.1
MPSLELRSDPVDLTASLVDIASVSGTEAAIADAVEAALRAQAPHLEVVRNGDAVLARTNL
GRSRRIVFAGHLDTVPVNDNLPSRRTGSGDDEVLHGLGSVDMKGGDAVFLHLAATLPRPR
YDVTFVFYDCEEVEAARNGLGRVERELPEWLRGDLAVVGEPSNAAIEAGCQGTLRAEIRL
TGVRAHTARAWMGTNAIHALAEPLRRLAEYEPRVVDIDGLTYREGLQAVRVSGGVAGNVV
PDEAVLAVNHRFAPDVTPEQAERHVREVFDGYDLTVVDRSPGALPGLSAPATAELVSAAG
GDVAAKLGWTDVARFAALGMPAVNFGPGDPTLAHTRQENVPARDIRRVGEVLRTFLAG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory