SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_005454202.1 NCBI__GCF_000244975.1:WP_005454202.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
27% identity, 92% coverage: 4:94/99 of query aligns to 2:92/564 of 3al0C

query
sites
3al0C
I
 
V
S
 
T
R
 
K
D
 
D
E
 
L
V
 
V
A
 
L
H
 
H
L
 
L
A
 
E
K
 
N
L
 
L
A
 
A
R
 
R
M
 
L
A
 
E
V
 
L
T
 
S
E
 
E
E
 
D
E
 
Q
L
 
R
D
 
E
V
 
S
F
 
L
A
 
M
G
 
K
Q
 
D
L
 
F
D
 
Q
Q
 
E
I
 
I
L
 
L
D
 
D
A
 
Y
V
 
V
A
 
E
K
 
L
V
 
L
S
 
N
E
 
E
V
 
V
A
 
D
S
 
V
D
 
E
D
 
G
I
 
V
P
 
E
P
 
P
M
 
M
S
 
Y
H
 
T
A
 
P
V
 
V
P
 
E
L
 
D
T
 
S
N
 
A
T
 
K
F
 
L
R
 
R
E
 
K
D
 
G
E
 
D
I
 
P
R
 
R
P
 
F
G
 
F
L
 
E
S
 
M
Q
 
R
Q
 
D
Q
 
L
A
 
I
L
 
K
A
 
K
G
 
N
A
 
F
P
 
P
S
 
E
A
 
E
E
 
K
D
 
D
G
 
G
R
 
H
F
 
I
R
 
K
V
 
V
P
 
P
R
 
G
I
 
I

Sites not aligning to the query:

Query Sequence

>WP_005454202.1 NCBI__GCF_000244975.1:WP_005454202.1
MSNISRDEVAHLAKLARMAVTEEELDVFAGQLDQILDAVAKVSEVASDDIPPMSHAVPLT
NTFREDEIRPGLSQQQALAGAPSAEDGRFRVPRILGEEQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory