Comparing WP_005812379.1 NCBI__GCF_000021925.1:WP_005812379.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3ip4B The high resolution structure of gatcab (see paper)
52% identity, 99% coverage: 6:483/484 of query aligns to 2:474/482 of 3ip4B
3h0rH Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
53% identity, 86% coverage: 5:418/484 of query aligns to 1:410/410 of 3h0rH
3h0rE Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
53% identity, 86% coverage: 5:418/484 of query aligns to 1:410/410 of 3h0rE
3h0rB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
53% identity, 86% coverage: 5:418/484 of query aligns to 1:410/410 of 3h0rB
3h0lB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
53% identity, 86% coverage: 5:418/484 of query aligns to 1:410/410 of 3h0lB
3al0B Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
47% identity, 98% coverage: 6:481/484 of query aligns to 2:479/482 of 3al0B
2g5iB Structure of tRNA-dependent amidotransferase gatcab complexed with adp-alf4 (see paper)
50% identity, 86% coverage: 6:420/484 of query aligns to 1:410/410 of 2g5iB
2df4B Structure of tRNA-dependent amidotransferase gatcab complexed with mn2+ (see paper)
51% identity, 83% coverage: 6:406/484 of query aligns to 1:396/399 of 2df4B
4wj3B Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa (see paper)
49% identity, 82% coverage: 7:402/484 of query aligns to 1:392/456 of 4wj3B
Sites not aligning to the query:
3kfuF Crystal structure of the transamidosome (see paper)
45% identity, 83% coverage: 7:410/484 of query aligns to 2:389/447 of 3kfuF
Sites not aligning to the query:
2d6fD Crystal structure of glu-tRNA(gln) amidotransferase in the complex with tRNA(gln) (see paper)
23% identity, 50% coverage: 4:246/484 of query aligns to 3:253/522 of 2d6fD
Sites not aligning to the query:
>WP_005812379.1 NCBI__GCF_000021925.1:WP_005812379.1
MSIFERYEMVCGVEVHVELATKTKIFCNCSTEFGGEQNTHVCPVCLGLPGVLPVLNREVV
NLAIKAGLALNCDIADFSKFDRKNYFYPDAPKNFQTSQYDLPICKNGWLEFAVDGEKKRV
GITRAHMEDDAGKLVHSGATISTSEESFVDYNRTGVPLLEIVSEPDMRSIAEVVSFLEEM
VRTIQYTEVSDCRMEQGSVRFDINVSLRPHGQKEFGTRTETKNLNSFSSVRRCLEYEIER
QARLLDDGEKVIQETRTWDEGKGVTLSLRSKEEAHDYRYFPEPDLVPLVIAREWVEEIRQ
TLPEMPGARRERYQSLGLTEYDAGVLTAAKALSDFFDEALQSYSDAKALANWVMGEFTRL
LNAKQISVEESPVRPSQLAELLTLIEKGAISGKIGKTVIEAMFESGKDPEVIIKEKGLAQ
ISDTAALLKLVDEVIAAHPQSVEDYKAGKDRAIGFLVGQIMKATKGQANPGVVNDLLKEQ
LAKF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory