Comparing WP_005812973.1 NCBI__GCF_000021925.1:WP_005812973.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5ugrA Malyl-coa lyase from methylobacterium extorquens (see paper)
31% identity, 91% coverage: 3:271/295 of query aligns to 12:303/323 of 5ugrA
5vxcA Crystal structure analysis of human clybl in complex with free coash (see paper)
26% identity, 97% coverage: 5:291/295 of query aligns to 7:301/301 of 5vxcA
Q8N0X4 Citramalyl-CoA lyase, mitochondrial; (3S)-malyl-CoA thioesterase; Beta-methylmalate synthase; Citrate lyase subunit beta-like protein; Citrate lyase beta-like; Malate synthase; EC 4.1.3.25; EC 3.1.2.30; EC 2.3.3.-; EC 2.3.3.9 from Homo sapiens (Human) (see 5 papers)
26% identity, 97% coverage: 5:291/295 of query aligns to 46:340/340 of Q8N0X4
5vxoA Crystal structure analysis of human clybl in complex with propionyl- coa (see paper)
26% identity, 96% coverage: 5:288/295 of query aligns to 7:298/298 of 5vxoA
Q9RUZ0 Citrate lyase subunit beta-like protein; EC 4.1.-.- from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
30% identity, 97% coverage: 2:286/295 of query aligns to 6:284/284 of Q9RUZ0
4l9zA Crystal structure of rhodobacter sphaeroides malyl-coa lyase in complex with magnesium, oxalate, and coa (see paper)
27% identity, 96% coverage: 5:288/295 of query aligns to 13:313/313 of 4l9zA
4l9yA Crystal structure of rhodobacter sphaeroides malyl-coa lyase in complex with magnesium, glyoxylate, and propionyl-coa (see paper)
27% identity, 96% coverage: 5:288/295 of query aligns to 14:314/314 of 4l9yA
Q3J5L6 L-malyl-CoA/beta-methylmalyl-CoA lyase; (3S)-malyl-CoA/beta-methylmalyl-CoA lyase; (S)-citramalyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.) (Rhodobacter sphaeroides) (see paper)
27% identity, 96% coverage: 5:288/295 of query aligns to 15:315/318 of Q3J5L6
4l9yC Crystal structure of rhodobacter sphaeroides malyl-coa lyase in complex with magnesium, glyoxylate, and propionyl-coa (see paper)
27% identity, 96% coverage: 5:288/295 of query aligns to 14:314/316 of 4l9yC
1sgjB Crystal structure of citrate lyase beta subunit
31% identity, 79% coverage: 2:234/295 of query aligns to 3:230/231 of 1sgjB
1sgjA Crystal structure of citrate lyase beta subunit
31% identity, 79% coverage: 2:234/295 of query aligns to 3:230/231 of 1sgjA
8wcoA (S)-citramalyl-coa lyase (see paper)
30% identity, 97% coverage: 3:287/295 of query aligns to 5:273/275 of 8wcoA
8khlA (S)-citramalyl-coa lyase (see paper)
30% identity, 97% coverage: 3:287/295 of query aligns to 5:273/275 of 8khlA
4l80C Crystal structure of chloroflexus aurantiacus malyl-coa lyase in complex with magnesium, oxalate, and propionyl-coa (see paper)
26% identity, 94% coverage: 5:282/295 of query aligns to 28:328/347 of 4l80C
S5N020 Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase; (3S)-3-carboxy-3-hydroxypropanoyl-CoA glyoxylate-lyase; (3S)-citramalyl-CoA pyruvate-lyase; (S)-citramalyl-CoA lyase; Erythro-beta-methylmalyl-CoA; L-malyl-CoA lyase; EC 4.1.3.24; EC 4.1.3.25 from Chloroflexus aurantiacus (see paper)
26% identity, 94% coverage: 5:282/295 of query aligns to 29:329/348 of S5N020
6as5A Crystal structure of protein cite from mycobacterium tuberculosis in complex with magnesium, acetoacetate and coenzyme a (see paper)
26% identity, 95% coverage: 8:287/295 of query aligns to 9:267/267 of 6as5A
6arbA Crystal structure of protein cite from mycobacterium tuberculosis in complex with magnesium, pyruvate and coenzyme a (see paper)
26% identity, 95% coverage: 8:287/295 of query aligns to 10:268/268 of 6arbA
6aq4B Crystal structure of protein cite from mycobacterium tuberculosis in complex with magnesium, pyruvate and citramalyl-coa (see paper)
26% identity, 93% coverage: 8:282/295 of query aligns to 11:264/268 of 6aq4B
6aq4C Crystal structure of protein cite from mycobacterium tuberculosis in complex with magnesium, pyruvate and citramalyl-coa (see paper)
26% identity, 93% coverage: 8:282/295 of query aligns to 11:264/267 of 6aq4C
3oyzA Haloferax volcanii malate synthase pyruvate/acetyl-coa ternary complex (see paper)
24% identity, 77% coverage: 27:253/295 of query aligns to 40:285/376 of 3oyzA
Sites not aligning to the query:
>WP_005812973.1 NCBI__GCF_000021925.1:WP_005812973.1
MAVMRSVMYIPGNNPKMVAKAPEIPADIITFDLEDAVPPAEKETARQIVRENLEYGAKGG
AQVFVRINNWETGLTNDDLEAIVWPGLNGVTLAKTGCAADVQRLEWKLEELEMRRGIPVG
TVKISMLLETAKGIAHAEECCLASKRNVNAIFGAVDYCRDMRVKITNEAVEQQYGRAKVG
VACRAAGIVAIDAPFVDYANIPAFEKNVAEGKQMGYEGRMIIHPGQVEPSNRMYAPDPAD
VKWANDVVKVFEEEGLAKGKAAVSLNGKMVDTPVYLNAKDILASQAEIDAKTAGK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory