SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_005815936.1 NCBI__GCF_000021925.1:WP_005815936.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
34% identity, 98% coverage: 2:93/94 of query aligns to 1:92/564 of 3al0C

query
sites
3al0C

K

K

I

V

T

T

P

K

K

D

D

L

V

V

E

L

R

H

L

L

A

E

F

N

V

L

S

A

R

R

L

L

E

E

L

L

T

S

D

E

E

D

E

Q

K

R

T

E

A

S

Y

L

T

M

R

K

S

D

L

F

Q

Q

E

E

S

I

L

L

S

D

Y

Y

L

V

D

E

L

L

L

L

K

N

Q

E

A

V

D

D

T

V

T

E

A

G

V

V

E

E

A

P

A

M

E

-

R

-

V

Y

L

T

P

P

M

V

I

E

N

D

L

S

F

A

R

K

E

L

D

R

K

K

A

G

Q

D

P

P

G

R

L

F

-

F

-

E

A

M

R

R

E

D

L

L

V

I

F

K

A

K

N

N

A

F

P

P

E

E

E

E

E

K

D

D

G

G

A

H

F

I

K

K

V

V

P

P

R

G

I

I

Sites not aligning to the query:

active site: 110, 335
binding o5'-(l-glutamyl-sulfamoyl)-adenosine: 106, 108, 109, 118, 122, 142, 276, 294, 295, 297, 298, 324, 325, 333
binding : 144, 145, 148, 208, 213, 252, 255, 266, 269, 270, 276, 297, 298, 299, 300, 301, 304, 330, 332, 363, 364, 365, 370, 387, 389, 391, 392, 397, 400, 407, 446, 447, 453, 457, 509, 520, 524, 527, 535, 536, 538, 539

Query Sequence

>WP_005815936.1 NCBI__GCF_000021925.1:WP_005815936.1
MKITPKDVERLAFVSRLELTDEEKTAYTRSLQESLSYLDLLKQADTTAVEAAERVLPMIN
LFREDKAQPGLARELVFANAPEEEDGAFKVPRIL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory