SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_007154429.1 NCBI__GCF_000170835.1:WP_007154429.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8y4wA Sialic acid bound form of tripartite atp-independent periplasmic (trap) transporter from fusobacterium nucleatum.
21% identity, 48% coverage: 288:634/726 of query aligns to 252:592/612 of 8y4wA

query
sites
8y4wA
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G
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P

Query Sequence

>WP_007154429.1 NCBI__GCF_000170835.1:WP_007154429.1
MTDKQHPEEHPVNDIGDDHVLAHDVDEEPVEANRRLFKGGMLKFVTLLAIAYSSFHLYSL
NIAPLETWSFRIVHIAGALVLGFILFAGARFVSAEEGPARHRWTTWIGALAMVPAVYALY
QTFSFHQMILGGTLRIPVDLETWHFGWPLLAASAIGIVMSWFHQRERSRFSVPDLVLIVC
SVAVAAYFLVVYNTSMRMSTGTSFAPVGISFAAIAGTALIMELTRRVAGLALVVIGLVFL
VYVFLGPYLPGFLGYPGLSVQRFFSQVYTDAGILGPTTAVSSTYIILFIVFAAFLQASKV
GDYFVNFAFAAAGRTRGGPAKVSIFASGLMGMINGTSAGNVVSTGSLTIPLMKKVGYSKQ
SAGAVEAAASTGGQIMPPIMGAGAFIMAEITGIPYTEIAIAAIIPAILYFASVYFMVDFE
AAKTGMRGMREDELPKLKTMVKQCYLFVPIIILIVALFMGYSVIRAGTLATVSAAVVSWF
SPNKMGIRKILEALEIASYMAIQIIVVCAAAGVIVGVISLTGVGARFSVLLLDVAEASQL
LALIFAMFISILLGMGMPTTAAYAVAASVVAPGLVQLGIEPLTAHFFVFYFAVVSAITPP
VALASYAAAGISGANAMETSVASFRIGIAAFIVPFMFFYNGALLMDAGWFDIARALITAL
FGVYMLSGGVLGWFARASAGVITRLLLIGAALLMIEGGLWTDLSGIALAVIAFLAQRQSK
LRPAST

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory