SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_007473230.1 NCBI__GCF_000170735.1:WP_007473230.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
34% identity, 97% coverage: 2:91/93 of query aligns to 1:92/564 of 3al0C

query
sites
3al0C
R
 
K
I
 
V
N
 
T
E
 
K
E
 
D
L
 
L
I
 
V
K
 
L
K
 
H
L
 
L
E
 
E
N
 
N
L
 
L
A
 
A
M
 
R
V
 
L
E
 
E
I
 
L
-
 
S
-
 
E
N
 
D
N
 
Q
K
 
R
E
 
E
E
 
S
M
 
L
A
 
M
K
 
K
N
 
D
L
 
F
S
 
Q
E
 
E
I
 
I
V
 
L
E
 
D
F
 
Y
V
 
V
E
 
E
L
 
L
L
 
L
N
 
N
E
 
E
I
 
V
D
 
D
T
 
V
S
 
E
N
 
G
I
 
V
D
 
E
A
 
P
A
 
M
F
 
Y
R
 
T
T
 
P
I
 
V
D
 
E
A
 
D
T
 
S
T
 
A
P
 
K
L
 
L
R
 
R
E
 
K
D
 
G
I
 
D
P
 
P
Q
 
R
K
 
F
S
 
F
E
 
E
V
 
M
I
 
R
E
 
D
D
 
L
V
 
I
L
 
K
K
 
K
N
 
N
A
 
F
P
 
P
K
 
E
S
 
E
K
 
K
D
 
D
G
 
G
Y
 
H
F
 
I
I
 
K
V
 
V
P
 
P
K
 
G
I
 
I

Sites not aligning to the query:

Query Sequence

>WP_007473230.1 NCBI__GCF_000170735.1:WP_007473230.1
MRINEELIKKLENLAMVEINNKEEMAKNLSEIVEFVELLNEIDTSNIDAAFRTIDATTPL
REDIPQKSEVIEDVLKNAPKSKDGYFIVPKIIE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory