SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_007474399.1 NCBI__GCF_000170735.1:WP_007474399.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

4m19A Dihydrodipicolinate synthase from c. Jejuni with pyruvate bound to the active site and lysine bound to allosteric site (see paper)
67% identity, 99% coverage: 3:287/288 of query aligns to 6:291/296 of 4m19A

query
sites
4m19A

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active site: T45 (= T42), Y109 (= Y106), Y135 (= Y132), R140 (= R137), K164 (= K161), I205 (= I201)
binding lysine: S49 (= S46), A50 (= A47), L52 (= L49), H54 (= H51), H57 (= H54), N82 (= N79), E86 (= E83), Y108 (= Y105)

6u01B Dihydrodipicolinate synthase (dhdps) from c.Jejuni, n84d mutant with pyruvate bound in the active site (see paper)
67% identity, 99% coverage: 3:287/288 of query aligns to 6:291/296 of 6u01B

query
sites
6u01B

G

G

A

A

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M

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T

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A

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P

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active site: T45 (= T42), Y109 (= Y106), Y135 (= Y132), R140 (= R137), K164 (= K161), I205 (= I201)
binding magnesium ion: S187 (= S183), E189 (≠ D185), D190 (= D186), N193 (= N189), I205 (= I201)

7kkdB Dihydrodipicolinate synthase (dhdps) from c.Jejuni, n84a mutant with pyruvate bound in the active site and r,r-bislysine bound at the allosteric site
67% identity, 99% coverage: 3:287/288 of query aligns to 16:301/306 of 7kkdB

query
sites
7kkdB

G

G

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A

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M

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T

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A

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A

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L

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H

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F

A

A

L

L

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D

G

E

D

N

F

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I

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E

A

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K

I

I

N

N

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D

E

E

L

L

Y

Y

D

N

L

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N

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K

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L

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F

I

C

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E

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N

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G

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E

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A

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Y

binding (2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid: S59 (= S46), L62 (= L49), H67 (= H54), E96 (= E83), Y118 (= Y105)

7kg2A Dihydrodipicolinate synthase (dhdps) from c.Jejuni, h59k mutant with pyruvate bound in the active site and l-histidine bound at the allosteric site
67% identity, 99% coverage: 3:287/288 of query aligns to 6:291/296 of 7kg2A

query
sites
7kg2A

G

G

A

A

M

M

T

T

A

A

L

L

I

I

T

T

P

P

F

F

R

K

N

N

G

G

K

K

V

V

D

D

E

E

E

Q

T

S

Y

Y

A

A

K

R

L

L

I

I

Q

K

R

R

Q

Q

I

I

D

E

N

N

D

G

I

I

D

D

W

A

V

V

V

V

P

P

V

V

G

G

T

T

T

T

G

G

E

E

S
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S

A
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T

T

L
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L

T

T

H

H

D

E

E

E

H
x
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K

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T

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C

I

I

E

E

I

I

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A

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V

E

E

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T

C

C

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K

G

G

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T

D

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T

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K

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L

L

A

A

G

G

A

A

G

G

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S

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N

S

A

T

T

H

H

E
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E

A

A

I

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D

G

L

L

A

A

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K

F

F

A

A

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K

Q

E

K

H

G

G

A

A

D

D

A

G

I

I

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L

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S

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V

A

A

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P

Y
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Y

Y

Y

N

N

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K

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P

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T

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Q

K

Q

G

G

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L

Y

Y

E

E

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H

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Y

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K

A

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L

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Y

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P

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G

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G

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D

D

A

A

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Y

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I

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A

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G

G

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S

N

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A

A

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D

G

E

D

N

F

Y

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E

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K

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I

N

N

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D

E

E

L

L

Y

Y

D

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L

I

N

N

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K

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L

F

F

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C

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E

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S

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N

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P

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P

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Y

T

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Y

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A

A

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L

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R

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L

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C

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P

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E

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K

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K

K

I

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K

E

E

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K

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K

Y

Y

binding histidine: S49 (= S46), A50 (= A47), L52 (= L49), K57 (≠ H54), N82 (= N79), E86 (= E83), Y108 (= Y105)

Q9X1K9 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
42% identity, 99% coverage: 1:285/288 of query aligns to 2:289/294 of Q9X1K9

query
sites
Q9X1K9

M

F

Q

R

G

G

A

V

M

G

T

T

A

A

L

I

I

V

T

T

P

P

F

F

R

K

N

N

G

G

K

E

V

L

D

D

E

L

E

E

T

S

Y

Y

A

E

K

R

L

L

I

V

Q

R

R

Y

Q

Q

I

L

D

E

N

N

D

G

I

V

D

N

W

A

V

L

V

I

P

V

V

L

G

G

T

T

T

T

G

G

E

E

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S

A

P

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N

H

E

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D

E

E

H

R

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E

K

K

C

L

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I

R

A

T

V

L

E

E

V

I

C

V

K

D

G

G

T

-

D

K

T

I

K

P

V

V

L

I

A

V

G

G

A

A

G

G

S

T

N

N

S

S

T

T

H

E

E

K

A

T

I

L

D

K

L

L

A

V

K

K

F

Q

A

A

Q

E

Q

K

K

L

G

G

A

A

D

N

A

G

I

V

L

L

S

V

V

V

A

T

P

P

Y

Y

Y

Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

Y

L

I

A

S

E

E

S

R

I

T

E

D

I

L

P

G

L

I

V

V

L

V

Y

Y

N

N

V

V

P

P

G

G

R

R

T

T

C

G

S

V

N

N

I

V

E

L

V

P

E

E

T

T

A

A

I

A

R

R

L

I

F

A

N

A

D

D

V

L

E

K

N

N

I

V

V

V

A

G

I

I

K

K

E

E

A

A

T

N

-

P

-
x
D

-
x
I

G
x
D

K

Q

I

I

E

D

N

R

V

T

V

V

A

S

L

L

C

T

-

K

-

Q

S

A

K

R

C

S

A

D

I

F

S

M

V

V

I

W

S

S

G

G

D

N

D

D

A

D

I

R

N

T

Y

F

P

Y

I

L

I

L

A

C

T

A

G

G

G

G

K

D

G

G

V

V

I

I

S

S

V

V

A

V

S

S

N

N

L

V

V

A

P

P

K

K

K

Q

I

M

A

V

K

E

L

L

V

C

H

A

K

E

A

Y

L

F

K

S

G

G

D

N

F

L

I

E

K

K

A

S

R

R

E

E

I

V

N

H

E

R

E

K

L

L

Y

R

D

P

L

L

N

M

K

K

V

A

L

L

F

F

I

V

E

E

S

T

N

N

P

P

I

I

P

P

I

V

K

K

Y

A

A

A

M

L

Y

N

E

L

A

M

G

G

L

F

I

I

P

E

S

N

L

-

E

E

Y

L

R

R

L

L

P

P

L

L

V

V

E

P

P

A

S

S

E

E

E

K

S

T

K

V

R

E

K

L

I

L

K

R

E

N

V

V

I

L

K

K

DID 166:168 (≠ --G 165) mutation to AAA: Exists as a monomer in solution. Decreased activity and substrate affinity. Reduced thermal stability.

1o5kA Crystal structure of dihydrodipicolinate synthase (tm1521) from thermotoga maritima at 1.80 a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 3:290/295 of 1o5kA

query
sites
1o5kA

M

F

Q

R

G

G

A

V

M

G

T

T

A

A

L

I

I

V

T

T

P

P

F

F

R

K

N

N

G

G

K

E

V

L

D

D

E

L

E

E

T

S

Y

Y

A

E

K

R

L

L

I

V

Q

R

R

Y

Q

Q

I

L

D

E

N

N

D

G

I

V

D

N

W

A

V

L

V

I

P

V

V

L

G

G

T
|
T

T

T

G

G

E

E

S

S

A

P

T

T

L

V

T

N

H

E

D

D

E

E

H

R

K

E

K

K

C

L

I

V

E

S

I

R

A

T

V

L

E
|
E

V

I

C

V

K
x
D

G

G

T

-

D

K

T

I

K

P

V

V

L

I

A

V

G

G

A

A

G

G

S

T

N

N

S

S

T

T

H

E

E

K

A

T

I

L

D

K

L

L

A

V

K

K

F

Q

A

A

Q

E

Q

K

K

L

G

G

A

A

D

N

A

G

I

V

L

L

S

V

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

Y

L

I

A

S

E

E

S

R

I

T

E

D

I

L

P

G

L

I

V

V

L

V

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

G

S

V

N

N

I

V

E

L

V

P

E

E

T

T

A

A

I

A

R

R

L

I

F

A

N

A

D

D

V

L

E

K

N

N

I

V

V

V

A

G

I

I

K
|
K

E

E

A

A

T

N

-

P

-

D

-

I

G

D

K

Q

I

I

E

D

N

R

V

T

V

V

A

S

L

L

C

T

-

K

-

Q

S

A

K

R

C

S

A

D

I

F

S

M

V

V

I

W

S

S

G

G

D

N

D

D

A

D

I

R

N

T

Y

F

P

Y

I

L

I

L

A

C

T

A

G

G

G

G

K

D

G

G

V

V

I
|
I

S

S

V

V

A

V

S

S

N

N

L

V

V

A

P

P

K

K

K

Q

I

M

A

V

K

E

L

L

V

C

H

A

K

E

A

Y

L

F

K

S

G

G

D

N

F

L

I

E

K

K

A

S

R

R

E

E

I

V

N

H

E

R

E

K

L

L

Y

R

D

P

L

L

N

M

K

K

V

A

L

L

F

F

I

V

E

E

S

T

N

N

P

P

I

I

P

P

I

V

K

K

Y

A

A

A

M

L

Y

N

E

L

A

M

G

G

L

F

I

I

P

E

S

N

L

-

E

E

Y

L

R

R

L

L

P

P

L

L

V

V

E

P

P

A

S

S

E

E

E

K

S

T

K

V

R

E

K

L

I

L

K

R

E

N

V

V

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K162 (= K161), I207 (= I201)
binding calcium ion: E65 (= E63), D68 (≠ K66)

4dxvA Crystal structure of dihydrodipicolinate synthase from acinetobacter baumannii complexed with mg and cl ions at 1.80 a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 2:286/291 of 4dxvA

query
sites
4dxvA

M

I

Q

Q

G

G

A

S

M

I

T

V

A

A

L

I

I

V

T

T

P

P

-

M

F

L

R

K

N

D

G

G

K

G

V

V

D

D

E

W

E

K

T

S

Y

L

A

E

K

K

L

L

I

V

Q

E

R

W

Q

H

I

I

D

E

N

Q

D

G

I

T

D

N

W

S

V

I

V

V

P

A

V

V

G

G

T
|
T

T

T

G

G

E

E

S

A

A

S

T

T

L

L

T

S

H

M

D

E

E

E

H

H

K

T

K

Q

C

V

I

I

E

K

I

E

A

I

V

I

E

R

V

V

C

A

K

N

G

-

T

K

D

R

T

I

K

P

V

I

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

I

D

E

L

L

A

T

K

K

F

A

A

A

Q

K

Q

D

K

L

G

G

A

A

D

D

A

A

I

A

L

L

S

L

V

V

A
x
T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

A

L

I

A

A

E

E

S

A

I

V

E

E

I

L

P

P

L

L

V

I

L

L

Y
|
Y

N
|
N

V
|
V

P
|
P

G

G

R
|
R

T
|
T

C

G

S

V

N

D

I

L

E

S

V

N

E

D

T

T

A

A

I

V

R

R

L

L

F

A

N

-

D

E

V

I

E

P

N

N

I

I

V

V

A

G

I

I

K
|
K

E

D

A

A

T

T

G

G

K

D

I

V

E

P

N

R

V

G

V

K

A

A

L

L

C

I

S

D

K

A

C

L

-

N

-

G

A

K

I

M

S

A

V

V

I

Y

S

S

G

G

D

D

D

D

A

E

I

T

N

A

Y

W

P

E

I

L

I

M

A

L

T

L

G

G

G

A

K

D

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

I

V

A

P

P

K

K

K

A

I

M

A

S

K

E

L

V

V

C

H

A

K

V

A

A

L

I

K

A

G

K

D

D

F

E

I

Q

K

Q

A

A

R

K

E

T

I

L

N

N

E

N

E

K

L

I

Y

A

D

N

L

L

N

H

K

N

V

I

L

L

F

F

I

C

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

D

S

T

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

P

P

L

S

A

E

E

E

Q

S

Y

K

R

R

E

K

P

I

L

K

R

E

N

V

A

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding magnesium ion: T104 (≠ A103), N134 (= N133), V135 (= V134), P136 (= P135), T139 (= T138)

3u8gA Crystal structure of the complex of dihydrodipicolinate synthase from acinetobacter baumannii with oxalic acid at 1.80 a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 2:286/291 of 3u8gA

query
sites
3u8gA

M

I

Q

Q

G

G

A

S

M

I

T

V

A
|
A

L

I

I

V

T

T

P

P

-

M

F

L

R

K

N

D

G

G

K

G

V

V

D

D

E

W

E

K

T

S

Y

L

A

E

K

K

L

L

I

V

Q

E

R

W

Q

H

I

I

D

E

N

Q

D

G

I

T

D

N

W

S

V

I

V

V

P

A

V

V

G
|
G

T
|
T

T
|
T

G

G

E

E

S

A

A

S

T

T

L

L

T

S

H

M

D

E

E

E

H

H

K

T

K

Q

C

V

I

I

E

K

I

E

A

I

V

I

E

R

V

V

C

A

K

N

G

-

T

K

D

R

T

I

K

P

V

I

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

I

D

E

L

L

A

T

K

K

F

A

A

A

Q

K

Q

D

K

L

G

G

A

A

D

D

A

A

I

A

L
|
L

S

L

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

A

L

I

A

A

E

E

S

A

I

V

E

E

I

L

P

P

L

L

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

G

S

V

N

D

I

L

E

S

V

N

E

D

T

T

A

A

I

V

R

R

L

L

F

A

N

-

D

E

V

I

E

P

N

N

I

I

V

V

A

G

I

I

K
|
K

E

D

A

A

T

T

G

G

K

D

I

V

E

P

N

R

V

G

V

K

A

A

L

L

C

I

S

D

K

A

C

L

-

N

-

G

A

K

I

M

S

A

V

V

I

Y

S

S

G

G

D

D

D

D

A

E

I

T

N

A

Y

W

P

E

I

L

I

M

A

L

T

L

G

G

G

A

K

D

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

I

V

A

P

P

K

K

K

A

I

M

A

S

K

E

L

V

V

C

H

A

K

V

A

A

L

I

K

A

G

K

D

D

F

E

I

Q

K

Q

A

A

R

K

E

T

I

L

N

N

E

N

E

K

L

I

Y

A

D

N

L

L

N

H

K

N

V

I

L

L

F

F

I

C

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

D

S

T

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

P

P

L

S

A

E

E

E

Q

S

Y

K

R

R

E

K

P

I

L

K

R

E

N

V

A

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding oxalate ion: A8 (= A7), G43 (= G41), T44 (= T42), T45 (= T43), L101 (= L100), Y133 (= Y132), K161 (= K161)

3tdfA Crystal structure of the complex of dihydrodipicolinate synthase from acinetobacter baumannii with 2-ketobutanoic acid at 1.99 a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 2:286/291 of 3tdfA

query
sites
3tdfA

M

I

Q

Q

G

G

A

S

M

I

T

V

A
|
A

L

I

I

V

T

T

P

P

-

M

F

L

R

K

N

D

G

G

K

G

V

V

D

D

E

W

E

K

T

S

Y

L

A

E

K

K

L

L

I

V

Q

E

R

W

Q

H

I

I

D

E

N

Q

D

G

I

T

D

N

W

S

V

I

V

V

P

A

V

V

G

G

T
|
T

T
|
T

G

G

E

E

S

A

A

S

T

T

L

L

T

S

H

M

D

E

E

E

H

H

K

T

K

Q

C

V

I

I

E

K

I

E

A

I

V

I

E

R

V

V

C

A

K

N

G

-

T

K

D

R

T

I

K

P

V

I

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

I

D

E

L

L

A

T

K

K

F

A

A

A

Q

K

Q

D

K

L

G

G

A

A

D

D

A

A

I

A

L

L

S

L

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

A

L

I

A

A

E

E

S

A

I

V

E

E

I

L

P

P

L

L

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

G

S

V

N

D

I

L

E

S

V

N

E

D

T

T

A

A

I

V

R

R

L

L

F

A

N

-

D

E

V

I

E

P

N

N

I

I

V

V

A

G

I

I

K
|
K

E

D

A

A

T

T

G

G

K

D

I

V

E

P

N

R

V

G

V

K

A

A

L

L

C

I

S

D

K

A

C

L

-

N

-

G

A

K

I

M

S

A

V

V

I

Y

S

S

G

G

D

D

D

D

A

E

I

T

N

A

Y

W

P

E

I

L

I

M

A

L

T

L

G

G

G

A

K

D

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

I

V

A

P

P

K

K

K

A

I

M

A

S

K

E

L

V

V

C

H

A

K

V

A

A

L

I

K

A

G

K

D

D

F

E

I

Q

K

Q

A

A

R

K

E

T

I

L

N

N

E

N

E

K

L

I

Y

A

D

N

L

L

N

H

K

N

V

I

L

L

F

F

I

C

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

D

S

T

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

P

P

L

S

A

E

E

E

Q

S

Y

K

R

R

E

K

P

I

L

K

R

E

N

V

A

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding 2-ketobutyric acid: A8 (= A7), T44 (= T42), T45 (= T43), Y133 (= Y132), K161 (= K161), I203 (= I201)

3tceA Crystal structure of the complex of dihydrodipicolinate synthase from acinetobacter baumannii with 5-hydroxylysine at 2.6 a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 2:286/291 of 3tceA

query
sites
3tceA

M

I

Q

Q

G

G

A

S

M

I

T

V

A

A

L

I

I

V

T

T

P

P

-

M

F

L

R

K

N

D

G

G

K

G

V

V

D

D

E

W

E

K

T

S

Y

L

A

E

K

K

L

L

I

V

Q

E

R

W

Q

H

I

I

D

E

N

Q

D

G

I

T

D

N

W

S

V

I

V

V

P

A

V

V

G

G

T
|
T

T

T

G

G

E

E

S

A

A
x
S

T

T

L
|
L

T

S

H

M

D

E

E

E

H
|
H

K

T

K

Q

C

V

I

I

E

K

I

E

A

I

V

I

E

R

V

V

C

A

K

N

G

-

T

K

D

R

T

I

K

P

V

I

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

I

D

E

L

L

A

T

K

K

F

A

A

A

Q

K

Q

D

K

L

G

G

A

A

D

D

A

A

I

A

L

L

S

L

V

V

A

T

P

P

Y
|
Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

A

L

I

A

A

E

E

S

A

I

V

E

E

I

L

P

P

L

L

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

G

S

V

N

D

I

L

E

S

V

N

E

D

T

T

A

A

I

V

R

R

L

L

F

A

N

-

D

E

V

I

E

P

N

N

I

I

V

V

A

G

I

I

K
|
K

E

D

A

A

T

T

G

G

K

D

I

V

E

P

N

R

V

G

V

K

A

A

L

L

C

I

S

D

K

A

C

L

-

N

-

G

A

K

I

M

S

A

V

V

I

Y

S

S

G

G

D

D

D

D

A

E

I

T

N

A

Y

W

P

E

I

L

I

M

A

L

T

L

G

G

G

A

K

D

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

I

V

A

P

P

K

K

K

A

I

M

A

S

K

E

L

V

V

C

H

A

K

V

A

A

L

I

K

A

G

K

D

D

F

E

I

Q

K

Q

A

A

R

K

E

T

I

L

N

N

E

N

E

K

L

I

Y

A

D

N

L

L

N

H

K

N

V

I

L

L

F

F

I

C

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

D

S

T

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

P

P

L

S

A

E

E

E

Q

S

Y

K

R

R

E

K

P

I

L

K

R

E

N

V

A

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding 5-hydroxylysine: S49 (≠ A47), L51 (= L49), H56 (= H54), Y106 (= Y105)

3rk8A Crystal structure of the chloride inhibited dihydrodipicolinate synthase from acinetobacter baumannii complexed with pyruvate at 1.8 a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 2:286/291 of 3rk8A

query
sites
3rk8A

M

I

Q

Q

G

G

A

S

M

I

T

V

A

A

L

I

I

V

T

T

P

P

-

M

F

L

R

K

N

D

G

G

K

G

V

V

D

D

E

W

E

K

T

S

Y

L

A

E

K

K

L

L

I

V

Q

E

R

W

Q

H

I

I

D

E

N

Q

D

G

I

T

D

N

W

S

V

I

V

V

P

A

V

V

G

G

T
|
T

T

T

G

G

E

E

S

A

A

S

T

T

L

L

T

S

H

M

D

E

E

E

H

H

K

T

K

Q

C

V

I

I

E

K

I

E

A

I

V

I

E

R

V

V

C

A

K

N

G

-

T

K

D

R

T

I

K

P

V

I

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

I

D

E

L

L

A

T

K

K

F

A

A

A

Q

K

Q

D

K

L

G

G

A

A

D

D

A

A

I

A

L

L

S

L

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

A

L

I

A

A

E

E

S

A

I

V

E

E

I

L

P

P

L

L

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

G

S

V

N

D

I

L

E

S

V

N

E

D

T

T

A

A

I

V

R

R

L

L

F

A

N

-

D

E

V

I

E

P

N

N

I

I

V

V

A

G

I

I

K
|
K

E

D

A

A

T

T

G

G

K

D

I

V

E

P

N

R

V

G

V

K

A

A

L

L

C

I

S

D

K

A

C

L

-

N

-

G

A

K

I

M

S

A

V

V

I

Y

S

S

G
|
G

D

D

D

D

A

E

I

T

N

A

Y

W

P

E

I

L

I

M

A

L

T

L

G

G

G

A

K

D

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

I

V

A

P

P

K

K

K

A

I

M

A

S

K

E

L

V

V

C

H

A

K

V

A

A

L

I

K

A

G

K

D

D

F

E

I

Q

K

Q

A

A

R

K

E

T

I

L

N

N

E

N

E

K

L

I

Y

A

D

N

L

L

N

H

K

N

V

I

L

L

F
|
F

I

C

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

D

S

T

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

P

P

L

S

A

E

E

E

Q

S

Y

K

R

R

E

K

P

I

L

K

R

E

N

V

A

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding pyruvic acid: R138 (= R137), K161 (= K161), G186 (= G184), F244 (= F242)

3pueB Crystal structure of the complex of dhydrodipicolinate synthase from acinetobacter baumannii with lysine at 2.6a resolution
42% identity, 99% coverage: 1:285/288 of query aligns to 2:286/291 of 3pueB

query
sites
3pueB

M

I

Q

Q

G

G

A

S

M

I

T

V

A

A

L

I

I

V

T

T

P

P

-

M

F

L

R

K

N

D

G

G

K

G

V

V

D

D

E

W

E

K

T

S

Y

L

A

E

K

K

L

L

I

V

Q

E

R

W

Q

H

I

I

D

E

N

Q

D

G

I

T

D

N

W

S

V

I

V

V

P

A

V

V

G

G

T
|
T

T

T

G

G

E

E

S

A

A

S

T

T

L

L

T

S

H

M

D

E

E

E

H

H

K

T

K

Q

C

V

I

I

E

K

I

E

A

I

V

I

E

R

V

V

C

A

K

N

G

-

T

K

D

R

T

I

K

P

V

I

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

I

D

E

L

L

A

T

K

K

F

A

A

A

Q

K

Q

D

K

L

G

G

A

A

D

D

A

A

I

A

L

L

S

L

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

L

Y

Y

E

Q

H

H

Y

Y

K

K

A

A

L

I

A

A

E

E

S

A

I

V

E

E

I

L

P

P

L

L

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

G

S

V

N

D

I

L

E

S

V

N

E

D

T

T

A

A

I

V

R

R

L

L

F

A

N

-

D

E

V

I

E

P

N

N

I

I

V

V

A

G

I

I

K
|
K

E

D

A

A

T

T

G

G

K

D

I

V

E

P

N

R

V

G

V

K

A

A

L

L

C

I

S

D

K

A

C

L

-

N

-

G

A

K

I

M

S

A

V

V

I

Y

S

S

G

G

D

D

D

D

A

E

I

T

N

A

Y

W

P

E

I

L

I

M

A

L

T

L

G

G

G

A

K

D

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

I

V

A

P

P

K

K

K

A

I

M

A

S

K

E

L

V

V

C

H

A

K

V

A

A

L

I

K

A

G

K

D

D

F

E

I

Q

K

Q

A

A

R

K

E

T

I

L

N

N

E

N

E

K

L

I

Y

A

D

N

L

L

N

H

K

N

V

I

L

L

F
|
F

I

C

E

E

S

S

N
|
N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

D

S

T

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

P

P

L

S

A

E

E

E

Q

S

Y

K

R

R

E

K

P

I

L

K

R

E

N

V

A

I

L

K

K

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding lysine: R138 (= R137), F244 (= F242), N248 (= N246)

Q07607 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
40% identity, 99% coverage: 1:286/288 of query aligns to 2:287/292 of Q07607

query
sites
Q07607

M

F

Q

E

G

G

A

S

M

I

T

T

A

A

L

L

I

V

T

T

P

P

F

F

R

A

N

D

G

D

K

R

V

I

D

D

E

E

E

V

T

A

Y

L

A

H

K

D

L

L

I

V

Q

E

R

W

Q

Q

I

I

D

E

N

E

D

G

I

S

D

F

W

G

V

L

V

V

P

P

V

C

G

G

T

T

T

T

G

G

E

E

S

S

A

P

T

T

L

L

T

S

H

K

D

S

E

E

H

H

K

E

K

Q

C

V

I

V

E

E

I

I

A

T

V

I

E

K

V

T

C

A

K

N

G

G

T

R

D

-

T

V

K

P

V

V

L

I

A

A

G

G

A

A

G

G

S

S

N

N

S

S

T

T

H

A

E

E

A

A

I

I

D

A

L

F

A

V

K

R

F

H

A

A

Q

Q

Q

N

K

A

G

G

A

A

D

D

A

G

I

V

L

L

S

I

V

V

A

S

P

P

Y

Y

Y

Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

I

Y

Y

E

Q

H

H

Y

F

K

K

A

A

L

I

A

D

E

A

S

A

I

S

E

T

I

I

P

P

L

I

V

I

L

V

Y

Y

N

N

V

I

P

P

G

G

R

R

T

S

C

A

S

I

N

E

I

I

E

H

V

V

E

E

T

T

A

L

I

A

R

R

L

I

F

F

N

E

D

D

V

C

E

P

N

N

I

V

V

K

A

G

I

V

K
|
K

E

D

A

A

T

T

G

G

K

N

I

L

E

L

N

R

V

P

V

S

A

L

L

E

C

R

S

M

K

A

C

C

A

G

-

E

-

D

I

F

S

N

V

L

I

L

S

T

G

G

D

E

D

D

A

G

I

T

N

A

Y

L

P

G

I

Y

I

M

A

A

T

H

G

G

G

G

K

H

G

G

V

C

I

I

S

S

V

V

A

T

S

A

N

N

L

V

V

A

P

P

K

A

K

L

I

C

A

A

K

D

L

F

V

Q

H

Q

K

A

A

C

L

L

K

N

G

G

D

D

F

F

I

A

K

A

A

A

R

L

E

K

I

L

N

Q

E

D

E

R

L

L

Y

M

D

P

L

L

N

H

K

R

V

A

L

L

F

F

I

L

E

E

S

T

N

N

P

P

I

A

P

G

I

A

K

K

Y

Y

A

A

M

L

Y

Q

E

R

A

L

G

G

L

R

I

M

P

R

S

G

L

-

E

D

Y

L

R

R

L

L

P

P

L

L

V

V

E

T

P

I

S

S

E

P

E

S

S

F

K

Q

R

E

K

E

I

I

K

D

E

D

V

A

I

M

K

R

R

H

K161 (= K161) active site, Schiff-base intermediate with substrate

3s8hA Structure of dihydrodipicolinate synthase complexed with 3- hydroxypropanoic acid(hpa)at 2.70 a resolution
45% identity, 99% coverage: 3:286/288 of query aligns to 4:287/292 of 3s8hA

query
sites
3s8hA

G

G

A

S

M

M

T

V

A
|
A

L
|
L

I

V

T

T

P

P

F

F

-

D

R

A

N

Q

G

G

K

R

V

L

D

D

E

W

E

D

T

S

Y

L

A

A

K

K

L

L

I

V

Q

D

R

F

Q

H

I

L

D

Q

N

D

D

G

I

T

D

N

W

A

V

I

V
|
V

P

A

V

V

G
|
G

T
|
T

T
|
T

G
|
G

E

E

S

S

A

A

T

T

L

L

T

D

H

V

D

E

E

E

H

H

K

I

K

Q

C

V

I

V

E

R

I

R

A

V

V

V

E

D

V

Q

C

V

K

K

G

G

T

R

D

-

T

I

K

P

V

V

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

V

D

A

L

L

A

T

K

E

F

A

A

A

Q

K

Q

S

K

G

G

G

A

A

D

D

A

A

I

C

L

L

S

L

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

M

Y

Y

E

Q

H

H

Y

F

K

R

A

H

L

I

A

A

E

E

S

A

I

V

E

A

I

I

P

P

L

Q

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

S

S

C

N

D

I

M

E

L

V

P

E

E

T

T

A

V

I

E

R

R

L

L

F

-

N

S

D

K

V

V

E

P

N

N

I

I

V

I

A

G

I

I

K
|
K

E

E

A

A

T

T

G

G

K

D

I

L

E

Q

N

R

V

A

V

K

A

E

L

V

C

I

S

E

K

R

C

V

A

G

-

K

-

D

I

F

S

L

V

V

I

Y

S

S

G

G

D

D

D

D

A

A

I

T

N

A

Y

V

P

E

I

L

I

M

A

L

T

L

G

G

G

G

K

K

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

V

V

A

P

P

K

R

K

A

I

M

A

S

K

D

L

L

V

C

H

A

K

A

A

A

L

M

K

R

G

G

D

D

F

A

I

A

K

A

A

A

R

R

E

A

I

I

N

N

E

D

E

R

L

L

Y

M

D

P

L

L

N

H

K

K

V

A

L

L

F

F

I

I

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

P

S

E

L

-

E

G

Y

I

R

R

L

L

P

P

L

L

V

T

E

W

P

L

S

S

E

P

E

H

S

C

K

H

R

D

K

P

I

L

K

R

E

Q

V

A

I

M

K

R

R

Q

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding 3-hydroxy-propanoic acid: A8 (= A7), L9 (= L8), V40 (= V38), G43 (= G41), T44 (= T42), T45 (= T43), G46 (= G44), K161 (= K161)

3puoA Crystal structure of dihydrodipicolinate synthase from pseudomonas aeruginosa(psdhdps)complexed with l-lysine at 2.65a resolution (see paper)
45% identity, 99% coverage: 3:286/288 of query aligns to 4:287/292 of 3puoA

query
sites
3puoA

G

G

A

S

M

M

T

V

A

A

L

L

I

V

T

T

P

P

F

F

-

D

R

A

N

Q

G

G

K

R

V

L

D

D

E

W

E

D

T

S

Y

L

A

A

K

K

L

L

I

V

Q

D

R

F

Q

H

I

L

D

Q

N

D

D

G

I

T

D

N

W

A

V

I

V

V

P

A

V

V

G

G

T
|
T

T

T

G

G

E

E

S
|
S

A
|
A

T

T

L
|
L

T
x
D

H
x
V

D

E

E

E

H

H

K

I

K

Q

C

V

I

V

E

R

I

R

A

V

V

V

E

D

V

Q

C

V

K

K

G

G

T

R

D

-

T

I

K

P

V

V

L

I

A

A

G

G

A

T

G

G

S

A

N

N

S

S

T

T

H

R

E

E

A

A

I

V

D

A

L

L

A

T

K

E

F

A

A

A

Q

K

Q

S

K

G

G

G

A

A

D

D

A

A

I

C

L

L

S

L

V

V

A

T

P

P

Y

Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

E

G

G

L

M

Y

Y

E

Q

H

H

Y

F

K

R

A

H

L

I

A

A

E

E

S

A

I

V

E

A

I

I

P

P

L

Q

V

I

L

L

Y
|
Y

N

N

V

V

P

P

G

G

R
|
R

T

T

C

S

S

C

N

D

I

M

E

L

V

P

E

E

T

T

A

V

I

E

R

R

L

L

F

-

N

S

D

K

V

V

E

P

N

N

I

I

V

I

A

G

I

I

K
|
K

E

E

A

A

T

T

G

G

K

D

I

L

E

Q

N

R

V

A

V

K

A

E

L

V

C

I

S

E

K

R

C

V

A

G

-

K

-

D

I

F

S

L

V

V

I

Y

S

S

G

G

D

D

D

D

A

A

I

T

N

A

Y

V

P

E

I

L

I

M

A

L

T

L

G

G

G

G

K

K

G

G

V

N

I
|
I

S

S

V

V

A

T

S

A

N

N

L

V

V

A

P

P

K

R

K

A

I

M

A

S

K

D

L

L

V

C

H

A

K

A

A

A

L

M

K

R

G

G

D

D

F

A

I

A

K

A

A

A

R

R

E

A

I

I

N

N

E

D

E

R

L

L

Y

M

D

P

L

L

N

H

K

K

V

A

L

L

F

F

I

I

E

E

S

S

N

N

P

P

I

I

P

P

I

V

K

K

Y

W

A

A

M

L

Y

H

E

E

A

M

G

G

L

L

I

I

P

P

S

E

L

-

E

G

Y
x
I

R

R

L
|
L

P

P

L
|
L

V
x
T

E

W

P

L

S

S

E

P

E

H

S

C

K

H

R

D

K

P

I

L

K

R

E

Q

V

A

I

M

K

R

R

Q

active site: T44 (= T42), Y107 (= Y106), Y133 (= Y132), R138 (= R137), K161 (= K161), I203 (= I201)
binding lysine: S48 (= S46), A49 (= A47), L51 (= L49), D52 (≠ T50), V53 (≠ H51), I266 (≠ Y265), L268 (= L267), L270 (= L269), T271 (≠ V270)

4i7wA Agrobacterium tumefaciens dhdps with lysine and pyruvate
45% identity, 88% coverage: 1:254/288 of query aligns to 2:257/294 of 4i7wA

query
sites
4i7wA

M

F

Q

K

G

G

A

S

M

I

T

P

A

A

L

L

I

I

T

T

P

P

F

F

R

T

-

D

N

N

G

G

K

A

V

V

D

D

E

E

E

Q

T

A

Y

F

A

A

K

A

L

H

I

V

Q

E

R

W

Q

Q

I

I

D

A

N

E

D

G

I

S

D

N

W

G

V

L

V

V

P

P

V

V

G

G

T
|
T

T

T

G

G

E

E

S
|
S

A
x
P

T

T

L
|
L

T

S

H

H

D

D

E

E

H
|
H

K

K

K

R

C

V

I

V

E

E

I

L

A

C

V

I

E

E

V

V

C

A

K

-

G

A

T

K

D

R

T

V

K

P

V

V

L

I

A

A

G

G

A

A

G

G

S

S

N
|
N

S

N

T

T

H

D

E
|
E

A

A

I

I

D

E

L

L

A

A

K

L

F

H

A

A

Q

Q

Q

D

K

A

G

G

A

A

D

D

A

A

I

L

L

L

S

V

V

V

A

T

P

P

Y
|
Y

Y
|
Y

N

N

K

K

P

P

T

T

Q

Q

K

K

G

G

L

L

Y

F

E

A

H

H

Y

F

K

S

A

A

L

V

A

A

E

E

S

A

I

V

E

K

I

L

P

P

L

I

V

V

L

I

Y
|
Y

N

N

V

I

P

P

G

P

R
|
R

T

S

C

V

S

V

N

D

I

M

E

S

V

P

E

E

T

T

A

M

I

G

R

A

L

L

F

V

N

K

D

A

V

H

E

K

N

N

I

I

V

V

A

G

I

V

K
|
K

E

D

A

A

T

T

G

G

K

K

I

L

E

D

N

R

V

V

V

S

A

E

L

Q

C

R

S

I

K

S

C

C

A

G

I

K

S

D

V

F

I

I

-

Q

-

L

S

S

G

G

D

E

D

D

A

S

I

T

N

A

Y

L

P
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