Comparing WP_007507152.1 NCBI__GCF_000230695.2:WP_007507152.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
5mzzB Crystal structure of the decarboxylase aiba/aibb in complex with 3- methylglutaconate (see paper)
33% identity, 53% coverage: 15:153/264 of query aligns to 13:153/241 of 5mzzB
5mzxB Crystal structure of the decarboxylase aiba/aibb in complex with 4'- diphospho pantetheine (see paper)
33% identity, 53% coverage: 15:153/264 of query aligns to 13:153/241 of 5mzxB
5mzyB Crystal structure of the decarboxylase aiba/aibb in complex with a possible transition state analog (see paper)
33% identity, 53% coverage: 15:153/264 of query aligns to 16:156/244 of 5mzyB
Q0S7Q0 Cholesterol ring-cleaving hydrolase IpdB subunit; (3E)-2-(2-carboxylatoethyl)-3-methyl-6-oxocyclohex-1-ene-1-carboxyl-CoA hydrolase beta subunit; COCHEA-CoA hydrolase beta subunit; EC 4.1.99.- from Rhodococcus jostii (strain RHA1) (see paper)
28% identity, 62% coverage: 1:164/264 of query aligns to 5:161/253 of Q0S7Q0
6cojB Crystal structure of rhodococcus jostii rha1 ipdab e105a cochea-coa complex (see paper)
28% identity, 62% coverage: 2:164/264 of query aligns to 1:156/248 of 6cojB
>WP_007507152.1 NCBI__GCF_000230695.2:WP_007507152.1
MSACTRDEWMTVAAARLLKNRDICFVGIGLPSAACNLARLTHAPQIVLIYESGTIGTRPD
VMPLSIGDGELAQTAACVVPLPEIFSYYLQAGRVDIGFLGAAQIDRHGNLNSTVIGPYET
PSTRLPGAGGAPEIAQHARQVFVMLRASKRSFVERLAFRSSAGYLDGHGARARSGAAGGG
PRAVITDFGMLAPHPESEELQLVALFEGATVEEARAAIGWPLQLADRIDTIAPPSAHELD
TLRALHARTREAHARPVRIPLQNG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory