SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_007695789.1 NCBI__GCF_000336675.1:WP_007695789.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
33% identity, 72% coverage: 85:305/305 of query aligns to 79:278/281 of P94530

query
sites
P94530
N
 
N
S
 
S
M
 
L
V
 
V
L
 
L
T
 
G
V
 
L
P
 
F
A
 
T
T
 
T
L
 
V
L
 
L
C
 
T
L
 
L
L
 
F
F
 
F
G
 
S
S
 
S
T
 
M
A
 
I
A
 
G
Y
 
Y
G
 
G
L
 
L
T
 
A
L
 
V
I
 
Y
N
 
D
W
 
F
R
 
K
G
 
G
Q
 
R
-
 
N
-
 
I
I
 
I
F
 
F
V
 
V
L
 
L
V
 
V
L
 
L
F
 
I
L
 
I
I
 
M
G
 
-
I
 
-
F
 
-
I
 
-
P
 
-
Y
 
-
Q
 
-
A
 
-
V
 
-
L
 
-
V
 
-
P
 
-
L
 
-
S
 
-
R
 
-
F
 
-
W
 
-
S
 
-
M
 
M
V
 
V
P
 
P
L
 
L
E
 
E
E
 
V
W
 
M
L
 
M
S
 
L
P
 
P
L
 
L
Y
 
F
V
 
K
L
 
L
S
 
T
F
 
-
V
 
-
Q
 
-
P
 
-
E
 
-
H
 
-
A
 
-
Q
 
-
L
 
-
V
 
V
E
 
G
L
 
L
I
 
H
I
 
L
T
 
I
D
 
D
A
 
S
A
 
Y
Y
 
T
G
 
G
I
 
V
-
 
I
-
 
L
-
 
P
-
 
F
-
 
I
-
 
V
-
 
S
P
 
P
I
 
V
C
 
A
T
 
V
L
 
F
L
 
F
F
 
F
R
 
R
G
 
Q
Y
 
Y
Y
 
A
L
 
L
S
 
G
L
 
L
P
 
P
G
 
R
D
 
D
L
 
L
I
 
L
E
 
D
A
 
S
A
 
A
K
 
R
L
 
M
D
|
D
G
 
G
A
 
C
S
 
T
V
 
E
T
 
F
S
 
G
I
 
I
Y
 
F
R
 
F
R
 
R
I
 
I
V
 
M
L
 
A
P
 
P
L
 
L
S
 
M
T
 
K
P
 
P
M
 
A
I
 
F
G
 
G
V
 
A
V
 
M
F
 
I
I
 
I
Y
 
L
Q
 
Q
F
 
S
T
 
L
Q
 
N
I
 
S
W
 
W
N
 
N
E
 
N
F
 
F
L
 
L
F
 
W
T
 
P
L
 
L
T
 
I
I
 
V
V
 
L
G
 
R
S
 
S
A
 
K
D
 
E
S
 
M
P
 
F
A
 
T
A
 
L
P
 
P
V
 
I
T
 
-
L
 
-
I
 
-
L
 
-
S
 
-
G
 
G
L
 
L
G
 
S
S
 
S
S
 
L
L
 
L
S
 
S
-
 
P
-
 
Y
G
 
G
V
 
N
D
 
N
F
 
Y
G
 
D
M
 
M
R
 
L
M
 
I
A
 
S
G
 
G
A
 
S
F
 
V
I
 
F
A
 
A
A
 
I
L
 
L
P
 
P
T
 
V
L
 
I
V
 
I
I
 
I
Y
 
F
V
 
L
L
 
F
F
 
F
A
 
Q
E
 
K
Q
 
Y
F
 
F
A
 
I
E
 
S
G
 
G
L
 
L
E
 
T
T
 
V
G
 
G
G
 
G

P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
30% identity, 42% coverage: 178:305/305 of query aligns to 169:293/296 of P68183

query
sites
P68183
G
 
G
I
 
I
P
 
A
I
 
L
C
 
H
T
 
V
L
 
W
L
 
T
F
 
I
R
 
K
G
 
G
Y
 
Y
Y
 
F
L
 
E
S
 
T
L
 
I
P
 
D
G
 
S
D
 
S
L
 
L
I
 
E
E
|
E
A
 
A
A
|
A
K
 
A
L
 
L
D
 
D
G
|
G
A
 
A
S
 
T
V
 
P
T
 
W
S
 
Q
I
 
A
Y
 
F
R
 
R
R
 
L
I
 
V
V
 
L
L
 
L
P
|
P
L
 
L
S
 
S
T
 
V
P
 
P
M
 
I
I
 
L
G
 
A
V
 
V
V
 
V
F
 
F
I
 
I
Y
 
L
Q
 
S
F
 
F
T
 
I
Q
 
A
I
 
A
W
 
I
N
 
T
E
 
E
F
 
V
L
 
P
F
 
V
T
 
A
L
 
S
T
 
L
I
 
L
V
 
L
G
 
R
S
 
D
A
 
V
D
 
N
S
 
S
P
 
Y
A
 
T
A
 
L
P
 
A
V
 
V
T
 
-
L
 
-
I
 
-
L
 
-
S
 
-
G
 
G
L
 
M
G
 
Q
S
 
Q
S
 
Y
L
 
L
S
 
N
G
 
P
V
 
Q
D
 
N
F
 
Y
-
 
L
-
 
W
G
 
G
M
 
D
R
 
F
M
 
A
A
 
A
G
 
A
A
 
A
F
 
V
I
 
M
A
 
S
A
 
A
L
 
L
P
 
P
T
 
I
L
 
T
V
 
I
I
 
V
Y
 
F
V
 
L
L
 
L
F
 
A
A
 
Q
E
 
R
Q
 
W
F
 
L
A
 
V
E
 
N
G
 
G
L
 
L
E
 
T
T
 
A
G
 
G
G
 
G

Query Sequence

>WP_007695789.1 NCBI__GCF_000336675.1:WP_007695789.1
MSRGTTDRTLFDRLPGFDLSRALLYLLILFFVAFFLVPLETGLMTAFKTTQGVTNTLPFF
PPLGEAFTFQKWVDAFDMLGRGLVNSMVLTVPATLLCLLFGSTAAYGLTLINWRGQIFVL
VLFLIGIFIPYQAVLVPLSRFWSMVPLEEWLSPLYVLSFVQPEHAQLVELIITDAAYGIP
ICTLLFRGYYLSLPGDLIEAAKLDGASVTSIYRRIVLPLSTPMIGVVFIYQFTQIWNEFL
FTLTIVGSADSPAAPVTLILSGLGSSLSGVDFGMRMAGAFIAALPTLVIYVLFAEQFAEG
LETGG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory