Comparing WP_008345541.1 NCBI__GCF_000691145.1:WP_008345541.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
Q96PE7 Methylmalonyl-CoA epimerase, mitochondrial; DL-methylmalonyl-CoA racemase; EC 5.1.99.1 from Homo sapiens (Human) (see paper)
23% identity, 90% coverage: 5:118/127 of query aligns to 47:165/176 of Q96PE7
Sites not aligning to the query:
4mttA Ni- and zn-bound gloa2 at low resolution (see paper)
25% identity, 98% coverage: 4:127/127 of query aligns to 1:126/128 of 4mttA
1fa6A Crystal structure of the co(ii)-bound glyoxalase i of escherichia coli (see paper)
30% identity, 97% coverage: 4:126/127 of query aligns to 1:125/128 of 1fa6A
1fa5A Crystal structure of the zn(ii)-bound glyoxalase i of escherichia coli (see paper)
30% identity, 97% coverage: 4:126/127 of query aligns to 1:125/128 of 1fa5A
P0AC81 Lactoylglutathione lyase; Aldoketomutase; Glyoxalase I; Glx I; Ketone-aldehyde mutase; Methylglyoxalase; S-D-lactoylglutathione methylglyoxal lyase; EC 4.4.1.5 from Escherichia coli (strain K12) (see paper)
30% identity, 97% coverage: 4:126/127 of query aligns to 1:125/135 of P0AC81
3oa4A Crystal structure of hypothetical protein bh1468 from bacillus halodurans c-125
26% identity, 87% coverage: 5:114/127 of query aligns to 4:117/138 of 3oa4A
Sites not aligning to the query:
6qh4C Crystal structure of human methylmalonyl-coa epimerase (mcee) p.Arg143cys variant
23% identity, 72% coverage: 5:95/127 of query aligns to 11:106/138 of 6qh4C
Sites not aligning to the query:
Q948T6 Lactoylglutathione lyase; Aldoketomutase; Allergen Glb33; Glyoxalase I; Glx I; Glyoxylase I 11; OsGLYI-11; OsGLYI11; Ketone-aldehyde mutase; Methylglyoxalase; PP33; S-D-lactoylglutathione methylglyoxal lyase; Allergen Ory s Glyoxalase I; EC 4.4.1.5 from Oryza sativa subsp. japonica (Rice) (see paper)
30% identity, 69% coverage: 11:97/127 of query aligns to 161:249/291 of Q948T6
Sites not aligning to the query:
>WP_008345541.1 NCBI__GCF_000691145.1:WP_008345541.1
MTTLRLDHTGIMVTNIDQSIDFYEKVVGMKLKDRITHTNGVIELAFLGFKDEAETEIELI
QGYSSDLPSEGKVHHLAFTTDNIHAEFNRIQKLQIELIDEEITTLPNGYCYFFFRGPDQE
WIEFFQR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory