SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_008482148.1 NCBI__GCF_000299915.1:WP_008482148.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
35% identity, 97% coverage: 15:424/424 of query aligns to 20:436/438 of P11551

query
sites
P11551
E
 
Q
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S
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Y
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I
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L
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F
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N
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L
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I
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L
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L
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L
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G
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Y
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G
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A
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A
L
 
L
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T
 
P
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A
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A
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E
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N
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Y
E
 
T
L
 
L
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F
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L
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G
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L
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I
L
 
I
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A
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G
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L
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G
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C
L
 
L
Q
x
E
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A
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A
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N
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F
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V
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T
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V
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L
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P
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H
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F
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R
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L
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N
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L
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A
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A
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I
L
 
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A
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V
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V
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G
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Q
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S
L
 
L
I
 
I
L
 
L
G
 
S
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N
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V
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P
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H
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Q
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S
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Q
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D
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L
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K
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D
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N
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D
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A
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K
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Q
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R
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L
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-
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E
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M
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A
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M
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A
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L
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A
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I
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M
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V
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S
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D
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A
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A
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G
-
 
N
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I
Q
 
P
L
 
T
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A
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E
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L
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I
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P
I
 
A
L
 
L
C
 
C
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F
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A
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A
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A
 
A

Sites not aligning to the query:

Query Sequence

>WP_008482148.1 NCBI__GCF_000299915.1:WP_008482148.1
MAGALPNTAQATSQEHQGYTFALTSMTFLFFMMGFITCLNDILIPHLKNVFSLNYTQAML
IQFCFFGAYFVVSYPAGALARRLGYKWALVISLVVSAIGCLLFITAASYRVYELFLGALF
ILASGVTTLQVAVNPYVTVLGKPETASARLTLNQAFNSLGTTLAPTFGAMLILGAATADF
TGLSQEQVTALRLSEADAVKFPYLLLASTFLVLAAVLAYLKLPDMREQDNAAAAQASQGG
SAWQYRHLVLGALGLFVYVGAEVSIGSLLVNFLGEANIAGLAEADAAHYVSYYWGGAMVG
RFIGSAVMRQVGAGKVLAFNALAAVLLLAAAVLGNGALAMWAVLAVGLFNSIMFPTIFSL
AVKGLGHHTAQGSGILCMAIVGGAIVPLLVGVAADNLGIQLAFALPILCYLYIAFYGLKG
SQTA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory