SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_008538694.1 NCBI__GCF_000245775.1:WP_008538694.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
35% identity, 96% coverage: 2:423/438 of query aligns to 8:425/438 of P11551

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P11551
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I

Sites not aligning to the query:

Query Sequence

>WP_008538694.1 NCBI__GCF_000245775.1:WP_008538694.1
MTESSKLIQYDDGYLNKTPIFQFVLLSCLFALWGAAASLNDILITQFKSVFTLSDFASAL
VQSAFYGGYFLISIPASVVIRKTTYKLAIMIGLIFYIGGCSLFFPASMMATYTMFLVAIF
SIAIGLGFLETASNTYSTMLGPRKYATLRLNISQTFQPIGSASGILLGKYLVFQEGESLA
SQMAQMTPDQIHLFRLQMLQHTLEPYKIMICILVAIFILFLITKYPKCKVKEVANNQNTP
KVTLGETLKYLSGNGLFKKGIVAQFLYVGMQVAVWSFTIRLALDLMPHINERMAADFMVI
SFVCFFVGKFIANFLMTKFSVNKVLLAYSIIGCILILYVAFIPNLTAIYAAVAISILLGP
CWATIYAETLKSVEKKYTETAGAIIVMSIIGGAFMPAVQGFVSDMVGSMQFSFIVNFFCF
AYIGWYFYYKMKLENKEG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory