SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_008538999.1 NCBI__GCF_000245775.1:WP_008538999.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

P69797 PTS system mannose-specific EIIAB component; EIIAB-Man; EIII-Man; EC 2.7.1.191 from Escherichia coli (strain K12) (see 4 papers)
36% identity, 93% coverage: 2:137/147 of query aligns to 3:135/323 of P69797

query
sites
P69797
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Sites not aligning to the query:

1vrcB Complex of enzyme iiamannose and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
43% identity, 70% coverage: 2:104/147 of query aligns to 2:104/129 of 1vrcB

query
sites
1vrcB
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P26379 PTS system fructose-specific EIIA component; EIIA-Fru; Fructose-specific phosphotransferase enzyme IIA component; lev-PTS; p16 from Bacillus subtilis (strain 168) (see paper)
37% identity, 71% coverage: 1:104/147 of query aligns to 1:104/146 of P26379

query
sites
P26379
M
 
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R

Query Sequence

>WP_008538999.1 NCBI__GCF_000245775.1:WP_008538999.1
MLGIIVGTHGHLAEELVNTCAMICGQPDNLTTVTLVPGEGPEDLMAKYNKAMEEMDTTNG
VIILNDLFGGSPYNAACRVAMENDKCGIVTGVSLPMLVEVINYRLCNGENANVQDAMEKA
VEASVAGAQKFHKSQVESETDDEGDDL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory