Comparing WP_008539904.1 NCBI__GCF_000245775.1:WP_008539904.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
P09099 Xylulose kinase; XK; Xylulokinase; 1-deoxy-D-xylulokinase; EC 2.7.1.17; EC 2.7.1.- from Escherichia coli (strain K12) (see paper)
22% identity, 42% coverage: 18:241/533 of query aligns to 3:218/484 of P09099
Sites not aligning to the query:
2itmA Crystal structure of the e. Coli xylulose kinase complexed with xylulose (see paper)
22% identity, 42% coverage: 18:241/533 of query aligns to 3:218/476 of 2itmA
Sites not aligning to the query:
6k76A Glycerol kinase form thermococcus kodakarensis, complex structure with substrate.
21% identity, 47% coverage: 18:268/533 of query aligns to 2:236/485 of 6k76A
Sites not aligning to the query:
>WP_008539904.1 NCBI__GCF_000245775.1:WP_008539904.1
MQTNEMIKSNIEQGLTTLGIEFGSTRIKAVLINTDHEPIAVGAYDWENSLIDGIWTYSEE
EIWAGLQGCYKNLVEEVKAKYGVTITKLAGLGFSAMMHGYLAFDEKDTLLVPFRTWRNNI
TGQASQKLIKLFNYNVPQRFSIAHLYQAILNNEEHVDKIKFFTTLAGFVHWKLSGEKVLG
IGDASGMFPIDINTKDYNEKMLADFDAHIADKNYPWSIREILPKVLVAGENAGYLTAEGA
KLLDPTGTLQAGTPMCPPEGDAGTGMVATNTVTKRTGNVSAGTSVFAMIVLERDLSKVYE
ELDMVTTPAGDLVAMAHSNNCTTDLNSWISLFHECLTSFGVKVDANELFSTLYNKALEGD
ADCGGLLAYCYHSGEHITGFTEGRPLFVRKSDSKFNLANFIRVHLSTALGAMKTGLDILT
KEENVTIEQILGHGGLFKTKGVGQTIMANAIGAPVTVMETAGEGGAWGIALLADYMNNKG
NLSLDEYLSTKVFKNSVAETIAPTKEGIEGFETFMTRYRNGLAIEQSAIDNLK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory