SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_008990092.1 NCBI__GCF_000300875.1:WP_008990092.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P36204 Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
49% identity, 99% coverage: 3:394/396 of query aligns to 5:394/654 of P36204

query
sites
P36204

T

T

I

I

E

R

D

D

F

V

N

D

F

L

N

K

N

G

K

K

K

R

A

V

L

I

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

V

D

K

G

-

D

D

F

G

N

V

V

V

T

Q

D

D

T

D

T

T

R
|
R

I

I

E

R

A

A

K

L

P

P

T

T

I

I

V

K

K

Y

V

A

L

L

E

E

E

Q

G

G

G

A

S

K

A

V

I

I

L

L

M

L

S

S

H

H

L

L

G

G

R

R

P

P

K

K

G

G

K

E

K

P

S

S

D

P

E

E

L

F

S

S

L

L

K

A

H

P

I

V

V

A

A

K

K

R

V

L

S

S

E

E

I

L

G

G

V

K

Q

E

V

V

K

K

F

F

V

V

D

P

Q

A

S

V

I

V

G

G

K

D

D

E

A

V

E

K

Q

K

A

A

A

V

K

E

D

E

L

L

Q

K

P

E

G

G

E

E

V

V

L

L

E

E

N

N

L

T

R
|
R

F

F

H

H

S

P

E

G

E

E

E

T

A

K

G

N

E

D

E

P

S

E

F

L

A

A

E

K

A

F

L

W

S

A

K

S

L

L

G

A

D

D

V

I

Y

H

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R
|
R

A

A

H

H

A

A

S

S

T

N

T

V

I

G

V

I

A

A

K

Q

Y

F

F

I

G

-

Q

-

N

P

K

S

C

V

F

A

G

G

Y

F

L

L

L

M

A

E

K

K

E

E

I

I

E

K

A

F

I

L

A

S

K

K

V

V

M

T

E

Y

S

N

G

P

E

E

K

K

P

P

V

Y

T

V

A

V

I

V

L

L

G

G

S

A

K

K

V

V

S

S

S

D

K

K

I

I

T

G

I

V

I

I

E

T

N

N

I

L

L

M

D

E

K

K

V

A

D

D

H

R

L

I

I

L

I

I

G

G

G

A

M

M

T

M

Y

F

T

T

F

F

I

L

K

K

A

A

Q

L

G

G

G

K

K

E

I

V

G

G

D

S

S

S

I

R

C

V

E

E

D

E

D

D

K

K

Q

I

E

D

L

L

A

A

L

K

R

E

I

L

L

L

K

E

D

K

A

A

Q

K

A

E

K

K

G

G

V

V

K

E

V

I

H

V

L

L

P

P

V

V

D

D

V

A

L

V

A

I

A

A

N

Q

D

K

F

I

N

E

N

P

D

G

A

V

D

E

T

K

Q

K

I

V

V

V

D

R

V

I

K

D

E

D

-

G

I

I

P

P

D

E

G

G

W

W

Q

M

G

G

L

L

D

D

A

I

G

G

P

P

K

E

T

T

L

I

E

E

N

L

F

F

K

K

E

Q

V

K

I

L

L

S

E

D

S

A

K

K

T

T

I

V

L

V

W

W

N

N

G

G

P

P

I

M

G

G

V

V

F

F

E

E

M

I

P

D

S

D

F

F

A

A

K

E

G

G

T

T

I

K

A

Q

I

V

G

A

N

L

Y

A

I

I

D

A

Q

A

A

L

T

T

K

E

D

K

G

G

A

A

F

I

S

T

L

V

V

V

G

G

D

D

S

S

V

A

A

A

V

V

K

N

Q

K

F

F

G

G

F

L

E

E

D

D

K

K

V

F

S

S

Y

H

V

V

S

S

T

T

G

G

A

A

M

S

L

L

E

E

S

F

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

I

A

A

A

S

I

I

R36 (= R35) binding substrate
R118 (= R117) binding substrate
R151 (= R150) binding substrate

1phpA Structure of the adp complex of the 3-phosphoglycerate kinase from bacillus stearothermophilus at 1.65 angstroms (see paper)
49% identity, 99% coverage: 2:394/396 of query aligns to 4:391/394 of 1phpA

query
sites
1phpA

K

K

T

T

I

I

E

R

D

D

F

V

N

D

F

V

N

R

N

G

K

K

K

R

A

V

L

F

I

C

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

E

G

-

D

Q

F

G

N

A

V

I

T

T

D

D

T

D

T

T

R
|
R

I

I

E

R

A

A

K

L

P

P

T

T

I

I

V

R

K

Y

V

L

L

I

E

E

E

H

G

G

G

A

S

K

A

V

I

I

L

L

M

A

S

S

H

H

L

L

G

G

R

R

P

P

K

K

G

G

K

K

K

V

S

V

D

E

E

E

L

L

S

R

L

L

K

D

H

A

I

V

V

A

A

K

K

R

V

L

S

G

E

E

I

L

G

E

V

R

Q

P

V

V

K

A

F

K

V

T

D

N

Q

E

S

A

I

V

G

G

K

D

D

E

A

V

E

K

Q

A

A

A

A

V

K

D

D

R

L

L

Q

N

P

E

G

G

E

D

V

V

L

L

E

E

N

N

L

V

R

R

F

F

H

Y

S

P

E

G

E

E

A

K

G

N

E

D

E

P

S

E

F

L

A

A

E

K

A

A

L

F

S

A

K

E

L

L

G

A

D

D

V

L

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

A

A

A

H

H

R

R

A

A

H

H

A

A

S

S

T

T

T

E

I

G

V

I

A

A

K

H

Y

Y

F

L

G

P

Q

A

N

-

K

-

C

V

F

A

G

G

Y

F

L

L

L

M

A

E

K

K

E

E

I

L

E

E

A

V

I

L

A

G

K

K

V

A

M

L

E

S

S

N

G

P

E

D

K

R

P

P

V

F

T

T

A

A

I

I

L

I

G

G

G
|
G

S

A

K
|
K

V

V

S

K

S

D

K
|
K

I

I

T

G

I

V

I

I

E

D

N

N

I

L

L

L

D

E

K

K

V

V

D

D

H

N

L

L

I

I

G

G

G
|
G

M

L

T

A

Y

Y

T

T

F

F

I

V

K

K

A

A

Q

L

G

G

G

H

K

D

I

V

G

G

D

K

S

S

I
x
L

C

L

E

E

D

E

D

D

K

K

Q

I

E

E

L

L

A

A

L

K

R

S

I

F

L

M

K

E

D

K

A

A

Q

K

A

E

K

K

G

G

V

V

K

R

V

F

H

Y

L

M

P

P

V

V

D

D

V

V

L

V

A

V

A

A

N

D

D

R

F

F

N

A

N

N

D

D

A

A

D

N

T

T

Q

K

I

V

V

V

D

P

V

I

K

D

E

A

I

I

P

P

D

A

G

D

W

W

Q

S

G

A

L

L

D

D

A

I

G

G

P

P

K

K

T

T

L

R

E

E

N

L

F

Y

K

R

E

D

V

V

I

I

L

R

E

E

S

S

K

K

T

L

I

V

L

V

W

W

N
|
N

G

G

P
|
P

I

M

G
|
G

V
|
V

F

F

E
|
E

M

M

P

D

S

A

F

F

A

A

K

H

G

G

T

T

I

K

A

A

I

I

G

A

N

E

Y

A

I

L

D

A

Q

E

A

A

T

L

K

D

D

-

G

-

A

T

F

Y

S

S

L

V

V

I

G

G

G
|
G

D
|
D

S
|
S

V

A

A

A

V

V

K

E

Q

K

F

F

G

G

F

L

E

A

D

D

K

K

V

M

S

D

Y

H

V

I

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

F

L

M

E

E

G

G

K

K

T

Q

L

L

P

P

G

G

I

V

A

V

A

A

I

L

active site: R36 (= R35), K197 (= K198), G351 (= G354), G374 (= G377)
binding adenosine-5'-diphosphate: G195 (= G196), K201 (= K202), G219 (= G220), G220 (= G221), L237 (≠ I238), N316 (= N317), P318 (= P319), G320 (= G321), V321 (= V322), E323 (= E324), G350 (= G353), D352 (= D355), S353 (= S356)

P18912 Phosphoglycerate kinase; EC 2.7.2.3 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
49% identity, 99% coverage: 2:394/396 of query aligns to 4:391/394 of P18912

query
sites
P18912

K

K

T

T

I

I

E

R

D

D

F

V

N

D

F

V

N

R

N

G

K

K

K

R

A

V

L

F

I

C

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

E

G

-

D

Q

F

G

N

A

V

I

T

T

D

D

T

D

T

T

R

R

I

I

E

R

A

A

K

L

P

P

T

T

I

I

V

R

K

Y

V

L

L

I

E

E

E

H

G

G

G

A

S

K

A

V

I

I

L

L

M

A

S

S

H

H

L

L

G

G

R

R

P

P

K

K

G

G

K

K

K

V

S

V

D

E

E

E

L

L

S

R

L

L

K

D

H

A

I

V

V

A

A

K

K

R

V

L

S

G

E

E

I

L

G

E

V

R

Q

P

V

V

K

A

F

K

V

T

D

N

Q

E

S

A

I

V

G

G

K

D

D

E

A

V

E

K

Q

A

A

A

A

V

K

D

D

R

L

L

Q

N

P

E

G

G

E

D

V

V

L

L

E

E

N

N

L

V

R

R

F

F

H

Y

S

P

E

G

E

E

A

K

G

N

E

D

E

P

S

E

F

L

A

A

E

K

A

A

L

F

S

A

K

E

L

L

G

A

D

D

V

L

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

A

A

A

H

H

R

R

A

A

H

H

A

A

S

S

T

T

T

E

I

G

V

I

A

A

K

H

Y

Y

F

L

G

P

Q

A

N

-

K

-

C

V

F

A

G

G

Y

F

L

L

L

M

A

E

K

K

E

E

I

L

E

E

A

V

I

L

A

G

K

K

V

A

M

L

E

S

S

N

G

P

E

D

K

R

P

P

V

F

T

T

A

A

I

I

L

I

G

G

S

A

K

K

V

V

S

K

S

D

K
|
K

I

I

T

G

I

V

I

I

E

D

N

N

I

L

L

L

D

E

K

K

V

V

D

D

H

N

L

L

I

I

G

G

M

L

T

A

Y

Y

T

T

F

F

I

V

K

K

A

A

Q

L

G

G

G

H

K

D

I

V

G

G

D

K

S

S

I

L

C

L

E

E

D

E

D

D

K

K

Q

I

E

E

L

L

A

A

L

K

R

S

I

F

L

M

K

E

D

K

A

A

Q

K

A

E

K

K

G

G

V

V

K

R

V

F

H

Y

L

M

P

P

V

V

D

D

V

V

L

V

A

V

A

A

N

D

D

R

F

F

N

A

N

N

D

D

A

A

D

N

T

T

Q

K

I

V

V

V

D

P

V

I

K

D

E

A

I

I

P

P

D

A

G

D

W

W

Q

S

G

A

L

L

D

D

A

I

G

G

P

P

K

K

T

T

L

R

E

E

N

L

F

Y

K

R

E

D

V

V

I

I

L

R

E

E

S

S

K

K

T

L

I

V

L

V

W

W

N
|
N

G

G

P

P

I

M

G

G

V

V

F

F

E
|
E

M

M

P

D

S

A

F

F

A

A

K

H

G

G

T

T

I

K

A

A

I

I

G

A

N

E

Y

A

I

L

D

A

Q

E

A

A

T

L

K

D

D

-

G

-

A

T

F

Y

S

S

L

V

V

I

G

G

G
|
G

D
|
D

S
|
S

V

A

A

A

V

V

K

E

Q

K

F

F

G

G

F

L

E

A

D

D

K

K

V

M

S

D

Y

H

V

I

S

S

T

T

G

G

A

A

M

S

L

L

E

E

S

F

L

M

E

E

G

G

K

K

T

Q

L

L

P

P

G

G

I

V

A

V

A

A

I

L

K201 (= K202) binding ATP
N316 (= N317) binding ATP
E323 (= E324) binding ATP
GGDS 350:353 (= GGDS 353:356) binding ATP

1vpeA Crystallographic analysis of phosphoglycerate kinase from the hyperthermophilic bacterium thermotoga maritima (see paper)
49% identity, 99% coverage: 3:394/396 of query aligns to 4:393/398 of 1vpeA

query
sites
1vpeA

T

T

I

I

E

R

D

D

F

V

N

D

F

L

N

K

N

G

K

K

K

R

A

V

L

I

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

V

D

K

G

-

D

D

F

G

N

V

V

V

T

Q

D

D

T

D

T

T

R
|
R

I

I

E

R

A

A

K

L

P

P

T

T

I

I

V

K

K

Y

V

A

L

L

E

E

E

Q

G

G

G

A

S

K

A

V

I

I

L

L

M

L

S

S

H

H

L

L

G

G

R

R

P

P

K

K

G

G

K

E

K

P

S

S

D

P

E

E

L

F

S

S

L

L

K

A

H

P

I

V

V

A

A

K

K

R

V

L

S

S

E

E

I

L

G

G

V

K

Q

E

V

V

K

K

F

F

V

V

D

P

Q

A

S

V

I

V

G

G

K

D

D

E

A

V

E

K

Q

K

A

A

A

V

K

E

D

E

L

L

Q

K

P

E

G

G

E

E

V

V

L

L

E

E

N

N

L

T

R

R

F

F

H

H

S

P

E

G

E

E

E

T

A

K

G

N

E

D

E

P

S

E

F

L

A

A

E

K

A

F

L

W

S

A

K

S

L

L

G

A

D

D

V

I

Y

H

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

A

S

S

T

N

T

V

I

G

V

I

A

A

K

Q

Y

F

F

I

G

-

Q

-

N

P

K

S

C

V

F

A

G

G

Y

F

L

L

L

M

A

E

K

K

E

E

I

I

E

K

A

F

I

L

A

S

K

K

V

V

M

T

E

Y

S

N

G

P

E

E

K

K

P

P

V

Y

T

V

A

V

I

V

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

S

S

D

K
|
K

I

I

T

G

I

V

I

I

E

T

N

N

I

L

L

M

D

E

K

K

V

A

D

D

H

R

L

I

I

L

I

I

G

G

G
|
G

G
x
A

M

M

T

M

Y

F

T

T

F

F

I

L

K

K

A

A

Q

L

G

G

G

K

K

E

I

V

G

G

D

S

S

S

I

R

C

V

E

E

D

E

D

D

K

K

Q

I

E

D

L

L

A

A

L

K

R

E

I

L

L

V

K

E

D

K

A

A

Q

K

A

E

K

K

G

G

V

V

K

E

V

I

H

V

L

L

P

P

V

V

D

D

V

A

L

V

A

I

A

A

N

Q

D

K

F

I

N

E

N

P

D

G

A

V

D

E

T

K

Q

K

I

V

V

V

D

R

V

I

K

D

E

D

-

G

I

I

P

P

D

E

G

G

W

W

Q

M

G

G

L

L

D

D

A

I

G

G

P

P

K

E

T

T

L

I

E

E

N

L

F

F

K

K

E

Q

V

K

I

L

L

S

E

D

S

A

K

K

T

T

I

V

L

V

W

W

N
|
N

G

G

P
|
P

I

M

G
|
G

V
|
V

F

F

E
|
E

M

I

P

D

S

D

F

F

A

A

K

E

G

G

T

T

I

K

A

Q

I

V

G

A

N

L

Y

A

I

I

D

A

Q

A

A

L

T

T

K

E

D

K

G

G

A

A

F

I

S

T

L

V

V

V

G

G

G
|
G

D
|
D

S
|
S

V

A

A

A

V

V

K

N

Q

K

F

F

G

G

F

L

E

E

D

D

K

K

V

F

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

F

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

I

A

A

A

S

I

M

active site: R35 (= R35), K196 (= K198), G353 (= G354), G376 (= G377)
binding phosphoaminophosphonic acid-adenylate ester: G194 (= G196), A195 (≠ S197), K196 (= K198), K200 (= K202), G218 (= G220), A219 (≠ G221), N316 (= N317), P318 (= P319), G320 (= G321), V321 (= V322), E323 (= E324), G352 (= G353), G353 (= G354), D354 (= D355), S355 (= S356)

P40924 Phosphoglycerate kinase; EC 2.7.2.3 from Bacillus subtilis (strain 168) (see paper)
48% identity, 99% coverage: 2:394/396 of query aligns to 4:391/394 of P40924

query
sites
P40924

K

K

T

T

I

L

E

K

D

D

F

I

N

D

F

V

N

K

N

G

K

K

K

V

A

V

L

F

I

C

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

-

D

D

F

G

N

E

V

V

T

T

D

D

T

D

T

T

R

R

I

I

E

R

A

A

K

L

P

P

T

T

I

I

V

K

K

H

V

L

L

A

E

D

E

Q

G

G

G

A

S

K

A

V

I

L

L

L

M

A

S

S

H

H

L

L

G

G

R

R

P

P

K

K

G

G

K

E

K

V

S

V

D

E

E

E

L

L

S

R

L

L

K

T

H

P

I

V

V

A

A

A

K

R

V

L

S

G

E

E

I

L

G

G

V

K

Q

E

V

V

K

K

F

K

V

A

D

D

Q

E

S

A

I

Y

G

G

K

D

D

A

A

V

E

K

Q

A

A

Q

A

I

K

S

D

E

L

M

Q

K

P

D

G

G

E

D

V

V

L

L

L

V

L

L

E

E

N

N

L

V

R

R

F

F

H

Y

S

P

E

G

E

E

A

K

G

N

E

D

E

P

S

E

F

L

A

A

E

K

A

A

L

F

S

A

K

E

L

L

G

A

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

A

A

A

H

H

R

R

A

A

H

H

A

A

S

S

T

T

T

A

I

G

V

I

A

A

K

E

Y

H

F

L

G

P

Q

A

N

-

K

-

C

V

F

A

G

G

Y

F

L

L

L

M

A

E

K

K

E

E

I

L

E

D

A

V

I

L

A

G

K

K

V

A

M

V

E
x
S

S

N

G

P

E

D

K

R

P

P

V

F

T

T

A

A

I

I

L

I

G

G

S

A

K

K

V

V

S

K

S

D

K

K

I

I

T

G

I

V

I

I

E

E

N

S

I

L

L

L

D

D

K

K

V

V

D

D

H

N

L

L

I

I

G

G

M

L

T

A

Y

Y

T

T

F

F

I

V

K

K

A

A

Q

L

G

G

G

Y

K

E

I

V

G

G

D

K

S

S

I

L

C

L

E

E

D

E

D

D

K

K

Q

I

E

E

L

L

A

A

L

K

R

S

I

F

L

M

K

D

D

R

A

A

Q

K

A

E

K

K

G

G

V

V

K

N

V

F

H

Y

L

M

P

P

V

E

D

D

V

V

L

L

A

V

A

A

N

D

D

D

F

F

N

S

N

N

D

D

A

A

D

N

T

V

Q

K

I

I

V

V

D

P

V

I

K

S

E

E

I

I

P

P

D

S

G

D

W

L

Q

E

G

A

L

I

D

D

A

I

G

G

P

T

K

K

T
|
T

L

R

E

E

N

T

F

Y

K

A

E

D

V

V

I

I

L

K

E

N

S

S

K

K

T

L

I

V

L

V

W

W

N

N

G

G

P

P

I

M

G

G

V

V

F

F

E

E

M

I

P

D

S

L

F

F

A

A

K

Q

G

G

T

T

I

K

A

A

I

V

G

A

N

E

Y

A

I

L

D

A

Q

E

A

A

T

-

K

K

D

D

G

-

A

T

F

Y

S

S

L

V

V

I

G

G

D

D

S

S

V

A

A

A

V

V

K

E

Q

K

F

F

G

G

F

L

E

A

D

D

K

K

V

M

S

S

Y

H

V

I

S

S

T

T

G

G

A

A

M

S

L

L

E

E

S

F

L

M

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

V

A

A

I

L

S183 (≠ E184) modified: Phosphoserine
T299 (= T300) modified: Phosphothreonine

1ltkC Crystal structure of phosphoglycerate kinase from plasmodium falciparum, in the open conformation
48% identity, 97% coverage: 11:394/396 of query aligns to 24:421/424 of 1ltkC

query
sites
1ltkC

N

N

K

K

A

V

L

L

I

V

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

I

D

E

G

N

D

G

F

I

N

-

V

I

T

K

D

D

T

T

T

N

R
|
R

I

I

E

T

A

A

A

T

K

L

P

P

T

T

I

I

V

N

K

H

V

L

L

K

E

K

E

E

G

G

G

A

S

S

A

K

I

I

-

I

L

L

M

I

S

S

H

H

L

C

G

G

R

R

P

P

K

D

G

G

K

L

K

R

S

N

D

E

E

K

L

Y

S

T

L

L

K

K

H

P

I

V

V

A

A

E

K

T

V

L

S

K

E

G

I

L

G

G

V

E

Q

E

V

V

K

L

F

F

V

L

D

N

Q

D

S

C

I

V

G

G

K

K

D

E

A

V

E

E

Q

D

A

K

A

I

K

N

D

A

L

A

Q

K

P

E

G

N

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

I

E

E

A

G

-

K

-

G

-

V

-

D

-

A

-

N

-

G

-

N

-

K

-

V

-

K

-

A

-

N

-

K

-

E

G

D

E

V

E

E

S

K

F

F

A

Q

E

N

A

D

L

L

S

T

K

K

L

L

G

A

D

D

V

V

Y

F

V

I

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

M

T

V

I

G

V

V

A

K

K

L

Y

N

F

V

G

-

Q

-

N

-

K

K

C

A

F

S

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

E

A

Y

I

F

A

S

K

K

V

A

M

L

E

E

S

N

G

P

E

Q

K

R

P

P

V

L

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

S

S

D

K

K

I

I

T

Q

I

L

I

I

E

K

N

N

I

L

L

L

D

D

K

K

V

V

D

D

H

R

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

Y

T

T

F

F

I

K

K

K

A

V

Q

L

G

N

-

M

K

K

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

D

A

K

G

Q

S

E

K

L

I

A

V

L

G

R

E

I

I

L

M

K

E

D

K

A

A

Q

K

A

A

K

K

G

N

V

V

K

Q

V

I

H

F

L

L

P

P

V

V

D

D

V

F

L

K

A

I

A

A

N

D

D

N

F

F

N

D

N

N

D

N

A

A

D

N

T

T

Q

K

I

F

V

V

-

T

D

D

V

E

K

E

E

G

I

I

P

P

D

D

G

N

W

W

Q

M

G

G

L

L

D

D

A

A

G

G

P

P

K

K

T

S

L

I

E

E

N

N

F

Y

K

K

E

D

V

V

I

I

L

L

E

T

S

S

K

K

T

T

I

V

L

I

W

W

N

N

G

G

P

P

I

Q

G
|
G

V
|
V

F

F

E
|
E

M

M

P

P

S

N

F

F

A

A

K

K

G

G

T

S

I

I

A

E

I

C

G

L

N

N

Y

L

I

V

D

V

Q

E

A

V

T

T

K

K

D

K

G

G

A

A

F

I

S

T

L

I

V

V

G

G

G
|
G

D
|
D

S

T

V

A

A

S

A

L

V

V

K

E

Q

Q

F

Q

G

N

F

K

E

K

D

N

K

E

V

I

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

V

A

L

A

A

I

L

active site: R47 (= R35), K223 (= K198), G381 (= G354), G404 (= G377)
binding adenosine monophosphate: G221 (= G196), A222 (≠ S197), K223 (= K198), G245 (= G220), G246 (= G221), G348 (= G321), V349 (= V322), E351 (= E324), D382 (= D355)

6yjeA Plasmoodium vivax phosphoglycerate kinase bound to nitrofuran inhibitor from peg3350 and ammonium acetate at ph 5.5
48% identity, 97% coverage: 12:394/396 of query aligns to 17:413/416 of 6yjeA

query
sites
6yjeA

K

K

A

V

L

L

I

V

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

I

D

E

G

N

D

G

F

V

N

-

V

I

T

K

D

D

T

T

T

N

R
|
R

I

I

E

T

A

A

A

T

K

L

P

P

T

T

I

I

V

H

K

H

V

L

L

K

E

K

E

E

G

G

G

A

S

A

A

K

I

I

-

I

L

L

M

I

S

S

H

H

L

C

G

G

R

R

P

P

K

D

G

G

K

T

K

K

S

N

D

L

E

K

L

Y

S

T

L

L

K

K

H

P

I

V

V

A

A

E

K

T

V

L

S

G

E

T

I

L

G

G

V

E

Q

E

V

V

K

L

F

F

V

L

D

S

Q

D

S

C

I

V

G

G

K

E

D

E

A

V

E

A

Q

A

A

Q

A

I

K

N

D

Q

L

A

Q

K

P

D

G

N

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

-

G

-

K

-

G

-

V

-

D

-

A

A

A

G

G

E

N

-

K

-

I

-

K

-

A

-

S

-

K

-

E

-

D

-

M

E

E

S

K

F

F

A

Q

E

N

A

E

L

L

S

T

K

K

L

L

G

G

D

D

V

V

Y

F

V

I

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

M

T

V

I

G

V

I

A

K

K

M

Y

N

F

V

G

-

Q

-

N

-

K

K

C

A

F

S

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

E

A

Y

I

F

A

S

K

K

V

A

M

L

E

E

S

N

G

P

E

Q

K

R

P

P

V

L

T

L

A

A

I

I

L

L

G

G

S

A

K
|
K

V

V

S

S

S

D

K

K

I

I

T

Q

I

L

I

I

E

K

N

N

I

L

L

L

D

D

K

K

V

V

D

D

H

K

L

M

I

I

G

G

G
|
G

M

M

T

A

Y
|
Y

T

T

F

F

I

K

K

Y

A

V

Q

L

G

N

-

M

K

K

I

I

G

G

D

D

S

S

I
x
L

C

F

E

D

D

E

D

A

K

G

Q

S

E

K

L

I

A

V

L

N

R

E

I

I

L

M

K

E

D

K

A

A

Q

K

A

A

K

K

G

N

V

V

K

E

V

I

H

Y

L

L

P

P

V

V

D

D

V

F

L

K

A

V

A

A

N

D

D

K

F
|
F

N

D

N

N

D

N

A

A

D

N

T

T

Q

K

I

V

V

V

-

T

D

D

V

E

K

E

E

G

I

I

P

E

D

D

G

K

W

W

Q
x
M

G
|
G

L
|
L

D

D

A

A

G

G

P

P

K

K

T

S

L

I

E

E

N

N

F

Y

K

K

E

D

V

V

I

I

L

L

E

S

S

S

K

K

T

T

I

I

L

I

W

W

N

N

G

G

P

P

I

Q

G
|
G

V
|
V

F

F

E

E

M

M

P

P

S

N

F

F

A

A

K

K

G

G

T

S

I

I

A

E

I

C

G

L

N

N

Y

L

I

V

D

I

Q

E

A

A

T

T

K

K

D

K

G

G

A

A

F

I

S

S

L

I

V

V

G

G

G
|
G

D

D

S

T

V

A

A

S

A

L

V

V

K

E

Q

Q

F

Q

G

Q

F

K

E

K

D

N

K

E

V

I

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

V

A

V

A

A

I

L

active site: R39 (= R35), K215 (= K198), G373 (= G354), G396 (= G377)
binding (2~{S})-2-(5-nitrofuran-2-yl)-2,3,5,6,7,8-hexahydro-1~{H}-[1]benzothiolo[2,3-d]pyrimidin-4-one: G237 (= G220), G238 (= G221), Y241 (= Y224), L256 (≠ I238), F291 (= F273), M311 (≠ Q292), G312 (= G293), L313 (= L294), G340 (= G321), V341 (= V322)

O60101 Phosphoglycerate kinase; EC 2.7.2.3 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
47% identity, 99% coverage: 4:394/396 of query aligns to 9:411/414 of O60101

query
sites
O60101

I

I

E

T

D

D

F

V

N

D

F

L

N

K

N

G

K

K

K

N

A

V

L

L

I

I

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

L

D

D

G

G

D

D

F

-

N

R

V

I

T

T

D

N

T

N

T

A

R

R

I

I

E

V

A

G

A

A

K

L

P

P

T

T

I

I

V

K

K

Y

V

A

L

L

E

E

E

Q

G

Q

G

P

S

K

A

A

-

V

I

I

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

N

G

G

K

A

K

R

S

V

D

A

E

K

L
x
Y

S
|
S

L

L

K

K

H

P

I

V

V

A

A

A

K

E

V

L

S

S

E

K

I

L

G

G

V

K

Q

P

V

V

K

K

F

F

V

L

D

D

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

K

D

E

L

A

Q

K

P

G

G

G

E

E

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

I

E

E

-

G

-

S

-

A

-

K

-

V

-

D

-

G

-

K

-

V

-

K

-

A

-

D

-

A

A
x
S

G

A

E

V

E

E

S

A

F

F

A

R

E

K

A

S

L

L

S

T

K

S

L

L

G

G

D

D

V

I

Y

F

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A
x
S

S
|
S

T

M

T

V

I

G

V

V

A

-

K

-

Y

-

F

-

G

D

Q

L

N

P

K

R

C

V

F
x
S

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

D

A

Y

I

F

A

S

K

K

V

A

M

L

E

E

S

N

G

P

E

A

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

S

A

K

K

V

V

S

A

S

D

K

K

I

I

T

Q

I

L

I

I

E

D

N

N

I

L

L

L

D

D

K

K

V

V

D

N

H

R

L

L

I

I

G

C

G

G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

G

G

-

M

K

K

I

I

G

G

D

D

S
|
S

I

L

C

F

E

D

D

E

D

A

K

G

Q
x
S

E

K

L

N

A

V

L

E

R

S

I

M

L

M

K

A

D

K

A

A

Q

K

A

K

K

N

G

N

V

V

K

E

V

V

H

F

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

K

D

D

A

A

D

K

T

V

Q

G

I

S

V

A

D
x
T

V

A

K

E

E

E

-

G

I

I

P

P

D

D

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

K

T

S

L

S

E

A

N

K

F

F

K

A

E

E

V

V

I

I

L

T

E

T

S
|
S

K

K

T

T

I

I

L

V

W

W

N

N

G

G

P

P

I

A

G

G

V

V

F

F

E

E

M

F

P

D

S

N

F

F

A

A

K

K

G

G

T

T

I

K

A
x
S

I

M

G

L

N

D

Y

A

I

C

D

V

Q

K

A

T

T

C

K

E

D

A

G

G

A

N

F

V

S

V

L

I

V

V

G

G

D

D

S
x
T

V

A

A

T

A

V

V

A

K

K

Q

K

F

Y

G

G

F

K

E

E

D

D

K

A

V

L

S
|
S

Y

H

V

V

S
|
S

T

T

G

G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

A

L

L

P

P

G

G

I

V

A

V

A

A

I

L

Y75 (≠ L70) modified: Phosphotyrosine
S76 (= S71) modified: Phosphoserine
S143 (≠ A124) modified: Phosphoserine
S172 (≠ A153) modified: Phosphoserine
S173 (= S154) modified: Phosphoserine
S183 (≠ F168) modified: Phosphoserine
S253 (= S237) modified: Phosphoserine
S260 (≠ Q244) modified: Phosphoserine
T299 (≠ D283) modified: Phosphothreonine
S328 (= S311) modified: Phosphoserine
S351 (≠ A334) modified: Phosphoserine
T373 (≠ S356) modified: Phosphothreonine
S387 (= S370) modified: Phosphoserine
S390 (= S373) modified: Phosphoserine

Sites not aligning to the query:

412 modified: Phosphoserine
413 modified: Phosphoserine

P00560 Phosphoglycerate kinase; EC 2.7.2.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 3 papers)
45% identity, 99% coverage: 3:396/396 of query aligns to 8:414/416 of P00560

query
sites
P00560

T

S

I

V

E

Q

D

D

F

L

N

D

F

L

N

K

N

D

K

K

K

R

A

V

L

F

I

I

R
|
R

V

V

D

D

F

F

N

N

V

V

P

P

L

L

D

D

G

G

D

K

F

-

N

K

V

I

T

T

D

S

T

N

T

Q

R
|
R

I

I

E

V

A

A

K

L

P

P

T

T

I

I

V

K

K

Y

V

V

L

L

E

E

E

H

G

H

G

P

S

R

-

Y

A

V

I

V

L

L

M

A

S

S

H

H

L

L

G

G

R

R

P

P

K

N

G

G

K

E

K

R

S

N

D

E

E

K

L

Y

S

S

L

L

K

A

H

P

I

V

V

A

A

K

K

E

V

L

S

Q

E

S

I

L

G

G

V

K

Q

D

V

V

K

T

F

F

V

L

D

N

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

A

A

A

A

V

K

K

D

A

L

S

Q

A

P

P

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R
|
R

F

Y

H

H

S

I

E

E

A

G

G

S

E

R

-

K

-

V

-

D

-

G

-

Q

-

K

-

V

-

K

-

A

-

S

-

K

-

E

-

D

-

V

E

Q

S

K

F

F

A

R

E

H

A

E

L

L

S

S

K

S

L

L

G

A

D

D

V

V

Y

Y

V

I

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R
|
R

A

A

H

H

A

S

S

S

T

-

I

-

V

M

A

V

K

G

Y

F

F

D

G

L

Q

P

N

Q

K

R

C

A

F

A

G

G

Y

F

L

L

A

E

K

K

E

E

I

L

E

K

A

Y

I

F

A

G

K

K

V

A

M

L

E

E

S

N

G

P

E

T

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

S

A

K

K

V

V

S

A

S

D

K

K

I

I

T

Q

I

L

I

I

E

D

N

N

I

L

L

L

D

D

K

K

V

V

D

D

H

S

L

I

I

I

G

G

M

M

T

A

Y

F

T

T

F

F

I

K

K

K

A

V

-

L

Q

E

G

N

G

T

K

E

I

I

G

G

D

D

S

S

I

I

C

F

E

D

D

K

D

A

K

G

Q

A

E

E

L

I

A

V

L

P

R

K

I

L

L

M

K

E

D

K

A

A

Q

K

A

A

K

K

G

G

V

V

K

E

V

V

H

V

L

L

P

P

V

V

D

D

V

F

L

I

A

I

A

A

N

D

D

A

F

F

N

S

N

A

D

D

A

A

D

N

T

T

Q

K

I

T

V

V

D

T

V

D

K

K

E

E

-

G

I

I

P

P

D

A

G

G

W

W

Q

Q

G

G

L

L

D

D

A

N

G

G

P

P

K

E

T

S

L

R

E

K

N

L

F

F

K

A

E

A

V

T

I

V

L

A

E

K

S

A

K

K

T

T

I

I

L

V

W

W

N

N

G

G

P

P

I

P

G

G

V

V

F

F

E

E

M

F

P

E

S

K

F

F

A

A

K

A

G

G

T

T

I

K

A

A

I

L

G

L

N

D

Y

E

I

V

D

V

Q

K

A

S

T

S

K

A

D

A

G

G

A

N

F

T

S

V

L

I

V

I

G

G

D

D

S

T

V

A

A

T

A

V

V

A

K

K

Q

K

F

Y

G

G

F

V

E

T

D

D

K

K

V

I

S

S

Y

H

V

V

S

S

T

T

G

G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

V

A

A

A

F

I

L

L

S

E

E

R22 (= R17) mutation to K: 2-fold reduction of Vmax.; mutation to M: 7-fold reduction of Vmax.
R39 (= R35) binding substrate
R122 (= R117) binding substrate
R169 (= R150) binding substrate

1qpgA 3-phosphoglycerate kinase, mutation r65q (see paper)
45% identity, 99% coverage: 3:396/396 of query aligns to 7:413/415 of 1qpgA

query
sites
1qpgA

T

S

I

V

E

Q

D

D

F

L

N

D

F

L

N

K

N

D

K

K

K

R

A

V

L

F

I

I

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

L

D

D

G

G

D

K

F

-

N

K

V

I

T

T

D

S

T

N

T

Q

R
|
R

I

I

E

V

A

A

K

L

P

P

T

T

I

I

V

K

K

Y

V

V

L

L

E

E

E

H

G

H

G

P

S

R

-

Y

A

V

I

V

L

L

M

A

S

S

H

H

L

L

G

G

R

Q

P

P

K

N

G

G

K

E

K

R

S

N

D

E

E

K

L

Y

S

S

L

L

K

A

H

P

I

V

V

A

A

K

K

E

V

L

S

Q

E

S

I

L

G

G

V

K

Q

D

V

V

K

T

F

F

V

L

D

N

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

A

A

A

A

V

K

K

D

A

L

S

Q

A

P

P

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

Y

H

H

S

I

E

E

A

G

G

S

E

R

-

K

-

V

-

D

-

G

-

Q

-

K

-

V

-

K

-

A

-

S

-

K

-

E

-

D

-

V

E

Q

S

K

F

F

A

R

E

H

A

E

L

L

S

S

K

S

L

L

G

A

D

D

V

V

Y

Y

V

I

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

-

V

M

A

V

K

G

Y

F

F

D

G

L

Q

P

N

Q

K

R

C

A

F

A

G

G

Y

F

L

L

A

E

K

K

E

E

I

L

E

K

A

Y

I

F

A

G

K

K

V

A

M

L

E

E

S

N

G

P

E

T

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

S

A

K
|
K

V

V

S

A

S

D

K

K

I

I

T

Q

I

L

I

I

E

D

N

N

I

L

L

L

D

D

K

K

V

V

D

D

H

S

L

I

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

K

K

K

A

V

-

L

Q

E

G

N

G

T

K

E

I

I

G

G

D

D

S

S

I

I

C

F

E

D

D

K

D

A

K

G

Q

A

E

E

L

I

A

V

L

P

R

K

I

L

L

M

K

E

D

K

A

A

Q

K

A

A

K

K

G

G

V

V

K

E

V

V

H

V

L

L

P

P

V

V

D

D

V

F

L

I

A

I

A

A

N

D

D

A

F

F

N

S

N

A

D

D

A

A

D

N

T

T

Q

K

I

T

V

V

D

T

V

D

K

K

E

E

-

G

I

I

P

P

D

A

G

G

W

W

Q

Q

G

G

L

L

D

D

A

N

G

G

P

P

K

E

T

S

L

R

E

K

N

L

F

F

K

A

E

A

V

T

I

V

L

A

E

K

S

A

K

K

T

T

I

I

L

V

W

W

N
|
N

G

G

P
|
P

I

P

G
|
G

V
|
V

F
|
F

E
|
E

M

F

P

E

S

K

F

F

A

A

K

A

G

G

T

T

I

K

A

A

I

L

G

L

N

D

Y

E

I

V

D

V

Q

K

A

S

T

S

K

A

D

A

G

G

A

N

F

T

S

V

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

V

V

A

K

K

Q

K

F

Y

G

G

F

V

E

T

D

D

K

K

V

I

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

V

A

A

A

F

I

L

L

S

E

E

active site: R38 (= R35), K213 (= K198), G371 (= G354), G394 (= G377)
binding magnesium-5'-adenyly-imido-triphosphate: G235 (= G220), G236 (= G221), N334 (= N317), P336 (= P319), G338 (= G321), V339 (= V322), F340 (= F323), E341 (= E324), G370 (= G353), G371 (= G354), D372 (= D355), T373 (≠ S356)

2wzcA The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp, 3pg and aluminium tetrafluoride (see paper)
45% identity, 99% coverage: 3:394/396 of query aligns to 6:402/405 of 2wzcA

query
sites
2wzcA

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

A

G

-

K

G

G

E

E

-

P

-

A

-

K

-

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K
|
K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N
|
N

G

G

P
|
P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R37 (= R35), K204 (= K198), G362 (= G354), G385 (= G377)
binding adenosine-5'-diphosphate: G202 (= G196), A203 (≠ S197), K204 (= K198), K208 (= K202), G226 (= G220), G227 (= G221), N325 (= N317), P327 (= P319), G329 (= G321), V330 (= V322), E332 (= E324), G361 (= G353), D363 (= D355), T364 (≠ S356)
binding tetrafluoroaluminate ion: R37 (= R35), K204 (= K198), K208 (= K202), G361 (= G353), G362 (= G354), G384 (= G376)

2wzbA The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp, 3pg and magnesium trifluoride (see paper)
45% identity, 99% coverage: 3:394/396 of query aligns to 6:402/405 of 2wzbA

query
sites
2wzbA

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

A

G

-

K

G

G

E

E

-

P

-

A

-

K

-

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K
|
K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N
|
N

G

G

P
|
P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R37 (= R35), K204 (= K198), G362 (= G354), G385 (= G377)
binding adenosine-5'-diphosphate: G202 (= G196), A203 (≠ S197), K204 (= K198), K208 (= K202), G226 (= G220), G227 (= G221), N325 (= N317), P327 (= P319), G329 (= G321), V330 (= V322), E332 (= E324), G361 (= G353), D363 (= D355), T364 (≠ S356)
binding trifluoromagnesate: K204 (= K198), K208 (= K202), G361 (= G353), G384 (= G376), G385 (= G377)

4axxA The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp 3-phosphoglycerate and beryllium trifluoride (see paper)
45% identity, 99% coverage: 3:394/396 of query aligns to 6:404/407 of 4axxA

query
sites
4axxA

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

-

G

-

K

-

A

-

K

-

A

-

E

-

P

A

A

G

K

E

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K
|
K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N
|
N

G

G

P
|
P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R37 (= R35), K206 (= K198), G364 (= G354), G387 (= G377)
binding adenosine-5'-diphosphate: G204 (= G196), A205 (≠ S197), K210 (= K202), G228 (= G220), G229 (= G221), N327 (= N317), P329 (= P319), G331 (= G321), V332 (= V322), E334 (= E324), G363 (= G353), G364 (= G354), D365 (= D355), T366 (≠ S356)
binding beryllium trifluoride ion: K206 (= K198), K210 (= K202), G363 (= G353)

2x15A The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp and 1,3- bisphosphoglycerate
45% identity, 99% coverage: 3:394/396 of query aligns to 6:405/408 of 2x15A

query
sites
2x15A

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D
|
D

F

F

N
|
N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H
|
H

L

L

G

G

R
|
R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R
|
R

F

F

H

H

S

V

E

E

-

G

-

K

-

G

-

K

-

A

-

E

-

P

A

A

G

K

E

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R
|
R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K
|
K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N
|
N

G

G

P
|
P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R37 (= R35), K207 (= K198), G365 (= G354), G388 (= G377)
binding adenosine-5'-diphosphate: G205 (= G196), A206 (≠ S197), K207 (= K198), K211 (= K202), G229 (= G220), G230 (= G221), N328 (= N317), P330 (= P319), G332 (= G321), V333 (= V322), E335 (= E324), G364 (= G353), G365 (= G354), D366 (= D355), T367 (≠ S356)
binding adenosine-5'-triphosphate: G205 (= G196), A206 (≠ S197), K207 (= K198), K211 (= K202), G229 (= G220), G230 (= G221), N328 (= N317), G332 (= G321), V333 (= V322), E335 (= E324), G364 (= G353), G365 (= G354), D366 (= D355), T367 (≠ S356), G387 (= G376), G388 (= G377)
binding 1,3-bisphosphoglyceric acid: D22 (= D19), N24 (= N21), R37 (= R35), H61 (= H58), R64 (= R61), R121 (= R117), R162 (= R150), K207 (= K198), K211 (= K202), G364 (= G353), G387 (= G376), G388 (= G377)

1kf0A Crystal structure of pig muscle phosphoglycerate kinase ternary complex with amp-pcp and 3pg (see paper)
44% identity, 99% coverage: 3:394/396 of query aligns to 7:413/416 of 1kf0A

query
sites
1kf0A

T

T

I

L

E

D

D

K

F

L

N

N

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

K

S

K

P

-

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

Q

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

D

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

-

G

-

K

-

G

-

K

-

D

-

A

-

S

-

G

-

N

-

K

-

V

-

K

-

A

-

E

-

P

A

A

G

K

E

I

E

K

S

T

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

M

T

V

I

G

V

V

A

N

K

L

Y

-

F

-

G

-

Q

P

N

K

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K

K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

N

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

H

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

S

E

E

V

A

I

V

L

A

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N

N

G

G

P

P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

Q

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D

D

S

T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R38 (= R35), K215 (= K198), G373 (= G354), G396 (= G377)
binding phosphomethylphosphonic acid adenylate ester: G213 (= G196), A214 (≠ S197), G237 (= G220), G238 (= G221), G340 (= G321), V341 (= V322), E343 (= E324)

2wzdA The catalytically active fully closed conformation of human phosphoglycerate kinase k219a mutant in complex with adp, 3pg and aluminium trifluoride (see paper)
45% identity, 99% coverage: 3:394/396 of query aligns to 6:402/405 of 2wzdA

query
sites
2wzdA

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

A

G

-

K

G

G

E

E

-

P

-

A

-

K

-

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K

A

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N
|
N

G

G

P
|
P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R37 (= R35), K204 (= K198), G362 (= G354), G385 (= G377)
binding adenosine-5'-diphosphate: G202 (= G196), A203 (≠ S197), K204 (= K198), G226 (= G220), G227 (= G221), N325 (= N317), P327 (= P319), G329 (= G321), V330 (= V322), E332 (= E324), G361 (= G353), D363 (= D355), T364 (≠ S356)
binding aluminum fluoride: R37 (= R35), K204 (= K198), G361 (= G353), G362 (= G354), G384 (= G376)

1vjcA Structure of pig muscle pgk complexed with mgatp (see paper)
44% identity, 99% coverage: 3:394/396 of query aligns to 7:413/416 of 1vjcA

query
sites
1vjcA

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

I

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

-

I

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

D

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

-

G

-

K

-

G

-

K

-

D

-

A

-

S

-

G

-

S

-

K

-

V

-

K

-

A

-

D

-

P

A

A

G

K

E

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

M

T

V

I

G

V

V

A

N

K

L

Y

-

F

-

G

-

Q

P

N

K

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S

A

K
|
K

V

V

S

A

S

D

K
|
K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

G
|
G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

S

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

S

E

E

V

A

I

V

L

A

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N

N

G

G

P

P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

Q

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S

T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R38 (= R35), K215 (= K198), G373 (= G354), G396 (= G377)
binding adenosine-5'-triphosphate: G213 (= G196), K219 (= K202), G238 (= G221), G340 (= G321), V341 (= V322), E343 (= E324), D374 (= D355)

P00558 Phosphoglycerate kinase 1; Cell migration-inducing gene 10 protein; Primer recognition protein 2; PRP 2; EC 2.7.2.3 from Homo sapiens (Human) (see 16 papers)
44% identity, 99% coverage: 3:394/396 of query aligns to 8:414/417 of P00558

query
sites
P00558

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D
|
D

F
|
F

N
|
N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H
|
H

L
|
L

G
|
G

R
|
R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I
x
L

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D
x
K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R
|
R

F

F

H

H

S

V

E

E

-

G

-
x
K

-

G

-

K

-

D

-

A

-

S

-

G

-

N

-

K

-

V

-

K

-

A

-

E

-

P

A

A

G

K

E

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G
|
G

D

D

V

V

Y

Y

V

V

N

N

D
|
D

A

A

F

F

G

G

T

T

A

A

H

H

R
|
R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A
x
K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K
x
R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

S

A

K
|
K

V

V

S

A

S

D

K
|
K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K
x
E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A
x
V

L

K

R
x
D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D
|
D

V

F

L

V

A

T

A

A

N

D

D

K

F

F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G
|
G

L

L

D
|
D

A
x
C

G

G

P

P

K

E

T

S

L

S

E

K

N
x
K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N

N

G

G

P

P

I

V

G

G

V

V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T
|
T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

DFN 24:26 (= DFN 19:21) binding substrate
R39 (= R35) binding substrate
HLGR 63:66 (= HLGR 58:61) binding substrate
L88 (≠ I82) to P: in PGK1D; with congenital non-spherocytic anemia; variant Matsue; dbSNP:rs137852531
K97 (≠ D91) modified: N6-(2-hydroxyisobutyryl)lysine; alternate
R123 (= R117) binding substrate
K131 (vs. gap) modified: N6-malonyllysine; alternate
G158 (= G137) to V: in PGK1D; with chronic hemolytic anemia; variant Shizuoka; dbSNP:rs137852532
D164 (= D143) to V: in PGK1D; with chronic hemolytic anemia and intellectual disability; variant Amiens; dbSNP:rs137852538
R171 (= R150) binding substrate
K191 (≠ A173) natural variant: Missing (in PGK1D; with chronic hemolytic anemia; variant Alabama)
R206 (≠ K188) to P: in PGK1D; with chronic hemolytic anemia; variant Uppsala; dbSNP:rs137852529
K216 (= K198) modified: N6-(2-hydroxyisobutyryl)lysine
K220 (= K202) binding ATP; modified: N6-(2-hydroxyisobutyryl)lysine
E252 (≠ K233) to A: in PGK1D; with chronic hemolytic anemia; variant Antwerp
V266 (≠ A247) to M: in PGK1D; with chronic non-spherocytic hemolytic anemia; variant Tokyo; dbSNP:rs431905501
D268 (≠ R249) to N: in Munchen; 21% of activity; dbSNP:rs137852528
D285 (= D266) to V: in PGK1D; with chronic hemolytic anemia; variant Herlev; 50% of activity; dbSNP:rs137852535
G313 (= G293) binding ATP
D315 (= D295) to N: in PGK1D; with rhabdomyolysis; variant Creteil; dbSNP:rs2149136994
C316 (≠ A296) to R: in PGK1D; with chronic hemolytic anemia; variant Michigan; dbSNP:rs137852533
K323 (≠ N303) modified: N6-(2-hydroxyisobutyryl)lysine
E344 (= E324) binding ATP
T352 (= T332) to N: in dbSNP:rs137852530
GGDT 373:376 (≠ GGDS 353:356) binding ATP

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

2y3iA The structure of the fully closed conformation of human pgk in complex with l-adp, 3pg and the tsa aluminium tetrafluoride (see paper)
44% identity, 99% coverage: 3:394/396 of query aligns to 6:412/414 of 2y3iA

query
sites
2y3iA

T

T

I

L

E

D

D

K

F

L

N

D

F

V

N

K

N

G

K

K

K

R

A

V

L

V

I

M

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

M

D

K

G

N

D

N

F

-

N

Q

V

I

T

T

D

N

T

N

T

Q

R
|
R

I

I

E

K

A

A

K

V

P

P

T

S

I

I

V

K

K

F

V

C

L

L

E

D

E

N

G

G

G

A

-

K

S

S

A

V

I

V

L

L

M

M

S

S

H

H

L

L

G

G

R

R

P

P

K

D

G

G

-

V

K

P

K

M

S

P

D

D

E

K

L

Y

S

S

L

L

K

E

H

P

I

V

V

A

A

V

K

E

V

L

S

K

E

S

I

L

G

G

V

K

Q

D

V

V

K

L

F

F

V

L

D

K

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

K

A

A

A

C

K

A

D

N

L

P

Q

A

P

A

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

F

H

H

S

V

E

E

-

G

-

K

-

G

-

K

-

D

-

A

-

S

-

G

-

N

-

K

-

V

-

K

-

A

-

E

-

P

A

A

G

K

E

I

E

E

S

A

F

F

A

R

E

A

A

S

L

L

S

S

K

K

L

L

G

G

D

D

V

V

Y

Y

V

V

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

M

V

V

A

G

K

V

Y

N

F

L

G

P

Q

Q

N

-

K

K

C

A

F

G

G

G

Y

F

L

L

L

M

A

K

K

K

E

E

I

L

E

N

A

Y

I

F

A

A

K

K

V

A

M

L

E

E

S

S

G

P

E

E

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K

K

I

I

T

Q

I

L

I

I

E

N

N

N

I

M

L

L

D

D

K

K

V

V

D

N

H

E

L

M

I

I

G

G

M

M

T

A

Y

F

T

T

F

F

I

L

K

K

A

V

Q

L

G

N

-

M

K

E

I

I

G

G

D

T

S

S

I

L

C

F

E

D

D

E

K

G

Q

A

E

K

L

I

A

V

L

K

R

D

I

L

L

M

K

S

D

K

A

A

Q

E

A

K

K

N

G

G

V

V

K

K

V

I

H

T

L

L

P

P

V

V

D

D

V

F

L

V

A

T

A

A

N

D

D

K

F
|
F

N

D

N

E

D

N

A

A

D

K

T

T

-

G

Q

Q

I

A

V

T

D

V

V

A

K

S

E

G

I

I

P

P

D

A

G

G

W

W

Q

M

G

G

L

L

D

D

A

C

G

G

P

P

K

E

T

S

L

S

E

K

N

K

F

Y

K

A

E

E

V

A

I

V

L

T

E

R

S

A

K

K

T

Q

I

I

L

V

W

W

N
|
N

G

G

P

P

I

V

G
|
G

V
|
V

F

F

E
|
E

M

W

P

E

S

A

F

F

A

A

K

R

G

G

T

T

I

K

A

A

I

L

G

M

N

D

Y

E

I

V

D

V

Q

K

A

A

T

T

K

S

D

R

G

G

A

C

F

I

S

T

L

I

V

I

G

G

G
|
G

D
|
D

S
x
T

V

A

A

T

A

C

V

C

K

A

Q

K

F

W

G

N

F

T

E

E

D

D

K

K

V

V

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

V

L

L

P

P

G

G

I

V

A

D

A

A

I

L

active site: R37 (= R35), K214 (= K198), G372 (= G354), G395 (= G377)
binding tetrafluoroaluminate ion: K214 (= K198), G371 (= G353), G372 (= G354), G394 (= G376)
binding l-adenosine-5'-diphosphate: G212 (= G196), A213 (≠ S197), F290 (= F273), N335 (= N317), G339 (= G321), V340 (= V322), E342 (= E324), G371 (= G353), G372 (= G354), D373 (= D355), T374 (≠ S356)

3pgkA The structure of yeast phosphoglycerate kinase at 0.25 nm resolution (see paper)
44% identity, 99% coverage: 3:396/396 of query aligns to 7:413/415 of 3pgkA

query
sites
3pgkA

T

S

I

V

E

Q

D

D

F

L

N

D

F

L

N

K

N

D

K

K

K

R

A

V

L

F

I

I

R

R

V

V

D

D

F

F

N

N

V

V

P

P

L

L

D

D

G

G

D

K

F

-

N

K

V

I

T

T

D

S

T

N

T

Q

R
|
R

I

I

E

V

A

A

K

L

P

P

T

T

I

I

V

K

K

Y

V

V

L

L

E

E

E

H

G

H

G

P

S

R

-

Y

A

V

I

V

L

L

M

A

S

S

H

H

L

L

G

G

R

R

P

P

K

N

G

G

K

E

K

R

S

N

D

E

E

K

L

Y

S

S

L

L

K

A

H

P

I

V

V

A

A

K

K

E

V

L

S

Q

E

S

I

L

G

G

V

K

Q

D

V

V

K

T

F

F

V

L

D

N

Q

D

S

C

I

V

G

G

K

P

D

E

A

V

E

E

Q

A

A

A

A

V

K

K

D

A

L

S

Q

A

P

P

G

G

E

S

V

V

L

I

L

L

E

E

N

N

L

L

R

R

F

Y

H

H

S

I

E

E

A

G

G

S

E

R

-

K

-

V

-

D

-

G

-

Q

-

K

-

V

-

K

-

A

-

S

-

K

-

E

-

D

-

V

E

Q

S

K

F

F

A

R

E

H

A

E

L

L

S

S

K

S

L

L

G

A

D

D

V

V

Y

Y

V

I

N

N

D

D

A

A

F

F

G

G

T

T

A

A

H

H

R

R

A

A

H

H

A

S

S

S

T

-

I

-

V

M

A

V

K

G

Y

F

F

D

G

L

Q

P

N

Q

K

R

C

A

F

A

G

G

Y

F

L

L

A

E

K

K

E

E

I

L

E

K

A

Y

I

F

A

G

K

K

V

A

M

L

E

E

S

N

G

P

E

T

K

R

P

P

V

F

T

L

A

A

I

I

L

L

G

G

G
|
G

S
x
A

K
|
K

V

V

S

A

S

D

K

K

I

I

T

Q

I

L

I

I

E

D

N

N

I

L

L

L

D

D

K

K

V

V

D

D

H

S

L

I

I

I

G

G

M

M

T

A

Y

F

T

T

F

F

I

K

K

K

A

V

-

L

Q

E

G

N

G

T

K

E

I

I

G

G

D

D

S

S

I

I

C

F

E

D

D

K

D

A

K

V

Q

G

E

P

L

E

A

I

L

A

R

K

I

L

L

M

K

E

D

K

A

A

Q

K

A

A

K

K

G

G

V

V

K

E

V

V

H

V

L

L

P

P

V

V

D

D

V

F

L

I

A

I

A

A

N

D

D

A

F
|
F

N

S

N

A

D

S

A

A

D

N

T

T

Q

K

I

T

V

V

D

T

V

D

K

K

E

E

-

G

I

I

P

P

D

A

G

G

W

W

Q

Q

G

G

L
|
L

D

D

A

N

G

G

P

P

K

E

T

S

L

R

E

K

N

L

F

F

K

A

E

A

V

T

I

V

L

A

E

K

S

A

K

T

T

V

I

I

L

L

W

W

N
|
N

G
|
G

P
|
P

I

P

G
|
G

V
|
V

F

F

E

E

M

F

P

E

S

K

F

F

A

A

K

A

G

G

T

T

I

K

A

A

I

L

G

L

N

D

Y

E

I

V

D

V

Q

K

A

S

T

S

K

A

D

A

G

G

A

N

F

T

S

V

L

I

V

I

G

G

G
|
G

D
|
D

S

T

V

A

A

T

A

V

V

A

K

K

Q

K

F

Y

G

G

F

V

E

T

D

D

K

K

V

I

S

S

Y

H

V

V

S

S

T

T

G

G

G
|
G

A

A

M

S

L

L

E

E

S

L

L

L

E

E

G

G

K

K

T

E

L

L

P

P

G

G

I

V

A

A

A

F

I

L

L

S

E

E

active site: R38 (= R35), K213 (= K198), G371 (= G354), G394 (= G377)
binding adenosine-5'-triphosphate: G211 (= G196), A212 (≠ S197), K213 (= K198), F289 (= F273), L311 (= L294), N334 (= N317), G335 (= G318), P336 (= P319), G338 (= G321), V339 (= V322), D372 (= D355)

Query Sequence

>WP_008990092.1 NCBI__GCF_000300875.1:WP_008990092.1
MKTIEDFNFNNKKALIRVDFNVPLDGDFNVTDTTRIEAAKPTIVKVLEEGGSAILMSHLG
RPKGKKSDELSLKHIVAKVSEIIGVQVKFVDQSIGKDAEQAAKDLQPGEVLLLENLRFHS
EEEAGEESFAEALSKLGDVYVNDAFGTAHRAHASTTIVAKYFGQNKCFGYLLAKEIEAIA
KVMESGEKPVTAILGGSKVSSKITIIENILDKVDHLIIGGGMTYTFIKAQGGKIGDSICE
DDKQELALRILKDAQAKGVKVHLPVDVLAANDFNNDADTQIVDVKEIPDGWQGLDAGPKT
LENFKEVILESKTILWNGPIGVFEMPSFAKGTIAIGNYIDQATKDGAFSLVGGGDSVAAV
KQFGFEDKVSYVSTGGGAMLESLEGKTLPGIAAILE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory