SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_009122071.1 NCBI__GCF_900129655.1:WP_009122071.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
45% identity, 84% coverage: 44:310/318 of query aligns to 46:315/334 of 5aovA

query
sites
5aovA

C

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active site: L100 (≠ V98), R241 (= R236), D265 (= D260), E270 (= E265), H288 (= H283)
binding glyoxylic acid: M52 (≠ T50), L53 (≠ Y51), L53 (≠ Y51), Y74 (≠ F72), A75 (≠ G73), V76 (≠ A74), G77 (= G75), R241 (= R236), H288 (= H283)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (≠ A74), T104 (= T102), F158 (≠ M152), G159 (= G153), R160 (≠ A154), I161 (= I155), S180 (≠ N174), R181 (= R175), A211 (≠ H206), V212 (≠ A207), P213 (= P208), T218 (= T213), I239 (≠ T234), A240 (= A235), R241 (= R236), H288 (= H283), G290 (= G285)

6biiA Crystal structure of pyrococcus yayanosii glyoxylate hydroxypyruvate reductase in complex with NADP and malonate (re-refinement of 5aow) (see paper)
45% identity, 84% coverage: 44:310/318 of query aligns to 45:314/332 of 6biiA

query
sites
6biiA

C

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active site: L99 (≠ V98), R240 (= R236), D264 (= D260), E269 (= E265), H287 (= H283)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V75 (≠ A74), T103 (= T102), G156 (= G151), F157 (≠ M152), G158 (= G153), R159 (≠ A154), I160 (= I155), A179 (≠ N174), R180 (= R175), S181 (≠ K176), K183 (≠ S179), V211 (≠ A207), P212 (= P208), E216 (= E212), T217 (= T213), V238 (≠ T234), A239 (= A235), R240 (= R236), D264 (= D260), H287 (= H283), G289 (= G285)

2dbqA Crystal structure of glyoxylate reductase (ph0597) from pyrococcus horikoshii ot3, complexed with NADP (i41) (see paper)
40% identity, 97% coverage: 4:310/318 of query aligns to 5:315/333 of 2dbqA

query
sites
2dbqA

I

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active site: L100 (≠ V98), R241 (= R236), D265 (= D260), E270 (= E265), H288 (= H283)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (≠ A74), T104 (= T102), L158 (≠ M152), G159 (= G153), R160 (≠ A154), I161 (= I155), S180 (≠ N174), R181 (= R175), T182 (≠ K176), A211 (≠ H206), V212 (≠ A207), P213 (= P208), T218 (= T213), I239 (≠ T234), A240 (= A235), R241 (= R236), D265 (= D260), H288 (= H283), G290 (= G285)

O58320 Glyoxylate reductase; EC 1.1.1.26 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
40% identity, 97% coverage: 4:310/318 of query aligns to 5:315/334 of O58320

query
sites
O58320

I

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A

T

S

I

F

D

G

T

A

R

R

V

E

E

G

S

M

T

A

R

E

Y

L

A

V

L

A

Q

K

N

N

I

L

I

I

N

A

Y

F

F

K

E

R

G

G

K

E

LGRI 158:161 (≠ MGAI 152:155) binding NADP(+)
SRT 180:182 (≠ NRK 174:176) binding NADP(+)
IAR 239:241 (≠ TAR 234:236) binding NADP(+)
HIG 288:290 (≠ HNG 283:285) binding NADP(+)

3bazA Structure of hydroxyphenylpyruvate reductase from coleus blumei in complex with NADP+ (see paper)
40% identity, 81% coverage: 58:316/318 of query aligns to 58:310/311 of 3bazA

query
sites
3bazA

E

E

I

L

I

I

D

D

R

A

A

L

T

P

N

K

L

L

E

E

I

I

I

V

A

S

N

S

F

F

G

S

A
x
V

G

G

Y

L

D

D

N

K

I

V

D

D

V

L

N

I

Y

K

A

C

I

E

T

E

K

K

G

G

I

V

L

R

V

V

T

T

N

N

S

T

P

P

K

D

P

V

V
x
L

I

T

E

D

P

D

T

V

A

A

E

D

L

L

A

A

F

I

S

G

L

L

L

I

L

L

N

A

V

V

A

L

R

R

R

R

V

I

S

C

E

E

C

C

D

D

R

K

K

Y

L

V

R

R

S

-

S

-

R

R

G

G

I

A

E

W

I

K

D

F

V

G

M

D

E

F

N

K

L

L

G

T

I

T

S

K

L

F

Y

S

G

G

K

K

T

R

L

V

G

G

I

I

V

I

G
|
G

M
x
L

G
|
G

A
x
R

I
|
I

G

G

Q

L

A

A

L

V

A

A

R

E

R

R

A

A

S

E

A

A

C

F

G

D

M

C

R

P

I

I

I

S

Y

Y

Y

F

N
x
S

R
|
R

K
x
S

R

K

L

K

S

P

Q

-

E

-

I

-

E

-

N

N

V

T

Y

N

E

Y

A

T

D

Y

W

Y

V

G

S

S

L

V

N

V

E

E

L

L

L

A

A

S

T

N

S

S

D

D

F

I

I

L

S

V

L

V

H

A

A
x
C

P
|
P

A

L

T

T

S

P

E

E

T
|
T

Y

T

H

H

M

I

I

I

D

N

I

R

Q

E

Q

V

F

I

N

D

L

A

M

L

K

G

P

P

S

K

V

G

V

V

L

L

I

I

N

N

T
x
I

A
x
G

R
|
R

G

G

N

P

L

H

I

V

N

D

E

E

R

P

V

E

L

L

I

V

H

S

F

A

L

L

Q

V

E

E

K

G

R

R

I

L

F

G

G

G

A
|
A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

R

E
|
E

P

P

E

E

I

V

P

P

S

E

E

K

L

L

L

F

Q

G

L

L

D

E

N

N

V

V

L

V

L

L

S

L

P

P

H
|
H

N

V

G
|
G

T

S

G

G

T

T

I

V

D

E

T

T

R

R

V

K

E

V

S

M

T

A

R

D

Y

L

A

V

L

V

Q

G

N

N

I

L

I

E

N

A

Y

H

F

F

E

S

G

G

K

K

T

P

L

L

L

L

S

T

P

P

V

V

active site: L98 (≠ V98), R230 (= R236), A251 (= A257), D254 (= D260), E259 (= E265), H277 (= H283)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V74 (≠ A74), G149 (= G151), L150 (≠ M152), G151 (= G153), R152 (≠ A154), I153 (= I155), S172 (≠ N174), R173 (= R175), S174 (≠ K176), C201 (≠ A207), P202 (= P208), T207 (= T213), I228 (≠ T234), G229 (≠ A235), R230 (= R236), D254 (= D260), H277 (= H283), G279 (= G285)

Q65CJ7 Hydroxyphenylpyruvate reductase; HPPR; EC 1.1.1.237 from Plectranthus scutellarioides (Coleus) (Solenostemon scutellarioides) (see paper)
40% identity, 81% coverage: 58:316/318 of query aligns to 60:312/313 of Q65CJ7

query
sites
Q65CJ7

E

E

I

L

I

I

D

D

R

A

A

L

T

P

N

K

L

L

E

E

I

I

I

V

A

S

N

S

F

F

G

S

A

V

G

G

Y

L

D

D

N

K

I

V

D

D

V

L

N

I

Y

K

A

C

I

E

T

E

K

K

G

G

I

V

L

R

V

V

T

T

N

N

S

T

P

P

K

D

P

V

V

L

I

T

E

D

P

D

T

V

A

A

E

D

L

L

A

A

F

I

S

G

L

L

L

I

L

L

N

A

V

V

A

L

R

R

R

R

V

I

S

C

E

E

C

C

D

D

R

K

K

Y

L

V

R

R

S

-

S

-

R

R

G

G

I

A

E

W

I

K

D

F

V

G

M

D

E

F

N

K

L

L

G

T

I

T

S

K

L

F

Y

S

G

G

K

K

T

R

L

V

G

G

I

I

V

I

G

G

M
x
L

G
|
G

A
x
R

I
|
I

G

G

Q

L

A

A

L

V

A

A

R

E

R

R

A

A

S

E

A

A

C

F

G

D

M

C

R

P

I

I

I

S

Y

Y

Y

F

N
x
S

R
|
R

K
x
S

R

K

L

K

S

P

Q

-

E

-

I

-

E

-

N

N

V

T

Y

N

E

Y

A

T

D

Y

W

Y

V

G

S

S

L

V

N

V

E

E

L

L

L

A

A

S

T

N

S

S

D

D

F

I

I

L

S

V

L

V

H

A

A

C

P

P

A

L

T

T

S

P

E

E

T

T

Y

T

H

H

M

I

I

I

D

N

I

R

Q

E

Q

V

F

I

N

D

L

A

M

L

K

G

P

P

S

K

V

G

V

V

L

L

I

I

N

N

T
x
I

A

G

R

R

G

G

N

P

L

H

I

V

N

D

E

E

R

P

V

E

L

L

I

V

H

S

F

A

L

L

Q

V

E

E

K

G

R

R

I

L

F

G

G

G

A

A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

R

E

E

P

P

E

E

I

V

P

P

S

E

E

K

L

L

L

F

Q

G

L

L

D

E

N

N

V

V

L

V

L

L

S

L

P

P

H

H

N

V

G

G

T

S

G

G

T

T

I

V

D

E

T

T

R

R

V

K

E

V

S

M

T

A

R

D

Y

L

A

V

L

V

Q

G

N

N

I

L

I

E

N

A

Y

H

F

F

E

S

G

G

K

K

T

P

L

L

L

L

S

T

P

P

V

V

LGRI 152:155 (≠ MGAI 152:155) binding NADP(+)
SRS 174:176 (≠ NRK 174:176) binding NADP(+)
I230 (≠ T234) binding NADP(+)
D256 (= D260) binding NADP(+)

1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
36% identity, 94% coverage: 10:309/318 of query aligns to 17:304/304 of 1wwkA

query
sites
1wwkA

L

L

P

K

K

D

V

A

A

G

F

L

E

E

T

V

I

I

V

Y

N

E

D

E

Y

Y

K

-

I

-

I

-

M

-

P

P

D

D

K

E

G

D

L

R

I

L

S

V

S

E

C

L

M

V

L

K

D

D

R

-

W

-

I

-

G

-

R

-

C

V

D

E

A

A

L

I

L

I

P

V

T

R

Y

S

A

K

F

P

K

K

V

V

T

T

K

R

E

R

I

V

I

I

D

E

R

S

A

A

T

P

N

K

L

L

E

K

I

V

I

I

A

A

N

R

F

A

G

G

A

V

G

G

Y

L

D

D

N

N

I

I

D

D

V

V

N

E

Y

A

A

A

I

K

T

E

K

K

G

G

I

I

L

E

V

V

T

V

N

N

S

A

P

P

K

A

P

A

V
x
S

I

S

E

R

P

S

T
x
V

A

A

E

E

L

L

A

A

F

V

S

G

L

L

L

M

L

F

N

S

V

V

A

A

R

R

R

K

V

I

S

A

E

F

C

A

D

D

R

R

K

K

L

M

R

R

S

E

S

G

R

V

G

W

I

A

E

K

I

-

D

-

V

-

M

K

E

E

N

A

L

M

G

G

I

I

S

E

L

L

Y

E

G

G

K

K

T

T

L

I

G

G

I

I

V

I

G
|
G

M
x
F

G
|
G

A
x
R

I
|
I

G

G

Q

Y

A

Q

L

V

A

A

R

K

R

I

A

A

S

N

A

A

C

L

G

G

M

M

R

N

I

I

I

L

Y

L

Y
|
Y

N
x
D

R
x
P

K

Y

R

P

L

N

S

E

Q

E

E

R

I

A

E

K

N

E

V

V

Y

-

E

N

A

G

D

K

W

F

V

V

S

D

L

L

N

E

E

T

L

L

L

L

A

K

T

E

S

S

D

D

F

V

I

V

S

T

L

I

H

H

A
x
V

P
|
P

A

L

T

V

S

E

E

S

T
|
T

Y

Y

H

H

M

L

I

I

D

N

I

E

Q

E

Q

R

F

L

N

K

L

L

M

M

K

K

P

K

S

T

V

A

V

I

L

L

I

I

N

N

T
|
T

A
x
S

R
|
R

G

G

N

P

L

V

I

V

N

D

E

T

R

N

V

A

L

L

I

V

H

K

F

A

L

L

Q

K

E

E

K

G

R

W

I

I

F

A

G

G

A

A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

E

E
|
E

P

P

E

-

I

L

P

P

S

K

E

D

-

H

-

P

L

L

L

T

Q

K

L

F

D

D

N

N

V

V

L

V

L

L

S

T

P

P

H
|
H

N

I

G
|
G

T

A

G

S

T

T

I

V

D

E

T

A

R

Q

V

E

E

R

S

A

T

G

R

V

Y

E

A

V

L

A

Q

E

N

K

I

V

I

V

N

K

Y

I

F

L

E

K

G

G

active site: S96 (≠ V98), R230 (= R236), D254 (= D260), E259 (= E265), H278 (= H283)
binding nicotinamide-adenine-dinucleotide: V100 (≠ T102), G146 (= G151), F147 (≠ M152), G148 (= G153), R149 (≠ A154), I150 (= I155), Y168 (= Y173), D169 (≠ N174), P170 (≠ R175), V201 (≠ A207), P202 (= P208), T207 (= T213), T228 (= T234), S229 (≠ A235), D254 (= D260), H278 (= H283), G280 (= G285)

5v7gA Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with NADPH and oxalate (see paper)
34% identity, 98% coverage: 6:318/318 of query aligns to 14:310/317 of 5v7gA

query
sites
5v7gA

V

V

T

L

H

E

Q

R

L

L

P

P

K

E

V

M

A

-

F

F

E

E

T

T

I

V

V

-

N

-

D

-

Y

-

K

R

I

I

I

E

M

R

P

A

D

D

K

A

G

A

L

L

I

V

S

T

S

A

C

D

M

M

L

R

D

D

R

V

W

S

I

G

G

I

R

A

C

V

D

S

A

G

L

K

L

L

P

P

T

V

Y

-

A

-

F

-

K

-

V

-

T

-

K

-

E

P

I

L

I

M

D

D

R

A

A

F

T

P

N

S

L

L

E

E

I

I

I

V

A

A

N

N

F

F

G
|
G

A
x
V

G
|
G

Y

Y

D

D

N

G

I

V

D

D

V

V

N

S

Y

R

A

A

I

A

T

A

K

R

G

G

I

I

L

V

V

V

T

T

N

N

S

T

P

P

K

D

P

V

V
x
L

I

T

E

E

P

E

T
x
V

A

A

E

D

L

T

A

A

F

I

S

G

L

L

L

L

L

L

N

N

V

T

A

L

R

R

R

L

V

L

S

P

E

Q

C

A

D

E

R

Q

K

W

L

L

R

R

S

Q

S

G

R

R

G

W

I

V

E

R

I

E

D

G

V

A

M

F

E

P

N

L

L

S

G

P

I

L

S

S

L

L

Y

R

G

G

K

R

T

T

L

V

G

G

I

L

V
x
F

G

G

M
x
L

G
|
G

A
x
R

I
|
I

G

G

Q

L

A

A

L

I

A

A

R

R

R

R

A

L

S

E

A

A

C

F

G

G

M

V

R

S

I

I

I

A

Y

Y

Y

H

N
x
T

R
|
R

K

T

R

P

L

-

S

R

Q

E

E

G

I

L

E

G

N

F

V

T

Y

Y

E

H

A

P

D

T

W

L

V

V

S

G

L

M

N

A

E

E

L

A

L

V

A

-

T

-

S

-

D

D

F

T

I

L

S

I

L

V

H

I

A
x
V

P
|
P

A

G

T

T

S

A

E
x
S

T
|
T

Y

L

H

K

M

A

I

V

D

N

I

A

Q

D

Q

V

F

L

N

S

L

A

M

L

K

G

P

P

S

K

V

G

V

V

L

L

I

I

N

N

T
x
V

A
x
G

R
|
R

G

G

N

S

L

T

I

V

N

D

E

E

R

A

V

A

L

L

I

V

H

T

F

A

L

L

Q

Q

E

N

K

G

R

T

I

I

F

A

G

G

A

A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

N

E
|
E

P

P

E

N

I

V

P

P

S

E

E

A

L

L

L

L

Q

S

L

F

D

P

N

N

V

V

L

S

L

L

S

L

P

P

H
|
H

N

V

G
x
A

T

S

G

A

T

S

I

V

D

V

T

T

R

R

V

N

E

A

S

M

T

S

R

D

Y

L

A

V

L

V

Q

D

N

N

I

L

I

K

N

A

Y

W

F

F

E

S

G

T

K

G

T

E

L

A

L

L

S

T

P

P

V

V

T

A

K

E

active site: L94 (≠ V98), R228 (= R236), D252 (= D260), E257 (= E265), H275 (= H283)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: V70 (≠ A74), V98 (≠ T102), F146 (≠ V150), L148 (≠ M152), G149 (= G153), R150 (≠ A154), I151 (= I155), T170 (≠ N174), R171 (= R175), V199 (≠ A207), P200 (= P208), S204 (≠ E212), T205 (= T213), V226 (≠ T234), G227 (≠ A235), R228 (= R236), H275 (= H283), A277 (≠ G285)
binding oxalate ion: G69 (= G73), V70 (≠ A74), G71 (= G75), R228 (= R236), H275 (= H283)

5j23A Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with 2'-phospho-adp-ribose (see paper)
34% identity, 98% coverage: 6:318/318 of query aligns to 14:310/318 of 5j23A

query
sites
5j23A

V

V

T

L

H

E

Q

R

L

L

P

P

K

E

V

M

A

-

F

F

E

E

T

T

I

V

V

-

N

-

D

-

Y

-

K

R

I

I

I

E

M

R

P

A

D

D

K

A

G

A

L

L

I

V

S

T

S

A

C

D

M

M

L

R

D

D

R

V

W

S

I

G

G

I

R

A

C

V

D

S

A

G

L

K

L

L

P

P

T

V

Y

-

A

-

F

-

K

-

V

-

T

-

K

-

E

P

I

L

I

M

D

D

R

A

A

F

T

P

N

S

L

L

E

E

I

I

I

V

A

A

N

N

F

F

G

G

A
x
V

G

G

Y

Y

D

D

N

G

I

V

D

D

V

V

N

S

Y

R

A

A

I

A

T

A

K

R

G

G

I

I

L

V

V

V

T

T

N

N

S

T

P

P

K

D

P

V

V
x
L

I

T

E

E

P

E

T

V

A

A

E

D

L

T

A

A

F

I

S

G

L

L

L

L

L

L

N

N

V

T

A

L

R

R

R

L

V

L

S

P

E

Q

C

A

D

E

R

Q

K

W

L

L

R

R

S

Q

S

G

R

R

G

W

I

V

E

R

I

E

D

G

V

A

M

F

E

P

N

L

L

S

G

P

I

L

S

S

L

L

Y

R

G

G

K

R

T

T

L

V

G

G

I

L

V

F

G

G

M
x
L

G
|
G

A
x
R

I
|
I

G

G

Q

L

A

A

L

I

A

A

R

R

R

R

A

L

S

E

A

A

C

F

G

G

M

V

R

S

I

I

I

A

Y

Y

Y

H

N
x
T

R
|
R

K

T

R

P

L

-

S

R

Q

E

E

G

I

L

E

G

N

F

V

T

Y

Y

E

H

A

P

D

T

W

L

V

V

S

G

L

M

N

A

E

E

L

A

L

V

A

-

T

-

S

-

D

D

F

T

I

L

S

I

L

V

H

I

A

V

P
|
P

A

G

T

T

S

A

E
x
S

T
|
T

Y

L

H

K

M

A

I

V

D

N

I

A

Q

D

Q

V

F

L

N

S

L

A

M

L

K

G

P

P

S

K

V

G

V

V

L

L

I

I

N

N

T

V

A

G

R
|
R

G

G

N

S

L

T

I

V

N

D

E

E

R

A

V

A

L

L

I

V

H

T

F

A

L

L

Q

Q

E

N

K

G

R

T

I

I

F

A

G

G

A

A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

N

E
|
E

P

P

E

N

I

V

P

P

S

E

E

A

L

L

L

L

Q

S

L

F

D

P

N

N

V

V

L

S

L

L

S

L

P

P

H
|
H

N

V

G

A

T

S

G

A

T

S

I

V

D

V

T

T

R

R

V

N

E

A

S

M

T

S

R

D

Y

L

A

V

L

V

Q

D

N

N

I

L

I

K

N

A

Y

W

F

F

E

S

G

T

K

G

T

E

L

A

L

L

S

T

P

P

V

V

T

A

K

E

active site: L94 (≠ V98), R228 (= R236), D252 (= D260), E257 (= E265), H275 (= H283)
binding [(2r,3r,4r,5r)-5-(6-amino-9h-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2r,3s,4r,5r)-3,4,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate: V70 (≠ A74), L148 (≠ M152), G149 (= G153), R150 (≠ A154), I151 (= I155), T170 (≠ N174), R171 (= R175), P200 (= P208), S204 (≠ E212), T205 (= T213), R228 (= R236)

5v7nA Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with NADP and 2-keto-d-gluconic acid (see paper)
34% identity, 98% coverage: 6:318/318 of query aligns to 15:311/319 of 5v7nA

query
sites
5v7nA

V

V

T

L

H

E

Q

R

L

L

P

P

K

E

V

M

A

-

F

F

E

E

T

T

I

V

V

-

N

-

D

-

Y

-

K

R

I

I

I

E

M

R

P

A

D

D

K

A

G

A

L

L

I

V

S

T

S

A

C

D

M

M

L

R

D

D

R

V

W

S

I

G

G

I

R

A

C

V

D

S

A

G

L

K

L

L

P

P

T

V

Y

-

A

-

F

-

K

-

V

-

T

-

K

-

E

P

I

L

I

M

D

D

R

A

A

F

T

P

N

S

L

L

E

E

I

I

I

V

A

A

N

N

F

F

G
|
G

A
x
V

G
|
G

Y

Y

D

D

N

G

I

V

D

D

V

V

N

S

Y

R

A

A

I

A

T

A

K

R

G

G

I

I

L

V

V

V

T

T

N

N

S

T

P

P

K

D

P

V

V
x
L

I

T

E

E

P

E

T
x
V

A

A

E

D

L

T

A

A

F

I

S

G

L

L

L

L

L

L

N

N

V

T

A

L

R

R

R

L

V

L

S

P

E

Q

C

A

D

E

R

Q

K

W

L

L

R

R

S

Q

S

G

R

R

G

W

I

V

E

R

I

E

D

G

V

A

M

F

E

P

N

L

L

S

G

P

I

L

S

S

L

L

Y

R

G

G

K

R

T

T

L

V

G

G

I

L

V

F

G

G

M
x
L

G
|
G

A
x
R

I
|
I

G

G

Q

L

A

A

L

I

A

A

R

R

R

R

A

L

S

E

A

A

C

F

G

G

M

V

R

S

I

I

I

A

Y

Y

Y

H

N
x
T

R
|
R

K

T

R

P

L

-

S

R

Q

E

E

G

I

L

E

G

N

F

V

T

Y

Y

E

H

A

P

D

T

W

L

V

V

S

G

L

M

N

A

E

E

L

A

L

V

A

-

T

-

S

-

D

D

F

T

I

L

S

I

L

V

H

I

A
x
V

P
|
P

A

G

T

T

S

A

E
x
S

T
|
T

Y

L

H

K

M

A

I

V

D

N

I

A

Q

D

Q

V

F

L

N

S

L

A

M

L

K

G

P

P

S

K

V

G

V

V

L

L

I

I

N

N

T
x
V

A
x
G

R
|
R

G

G

N

S

L

T

I

V

N

D

E

E

R

A

V

A

L

L

I

V

H

T

F

A

L

L

Q

Q

E

N

K

G

R

T

I

I

F

A

G

G

A

A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

N

E
|
E

P

P

E

N

I

V

P

P

S

E

E

A

L

L

L

L

Q

S

L

F

D

P

N

N

V

V

L

S

L

L

S

L

P

P

H
|
H

N

V

G
x
A

T
x
S

G

A

T

S

I

V

D

V

T

T

R
|
R

V

N

E

A

S

M

T

S

R

D

Y

L

A

V

L

V

Q

D

N

N

I

L

I

K

N

A

Y

W

F

F

E

S

G

T

K

G

T

E

L

A

L

L

S

T

P

P

V

V

T

A

K

E

active site: L95 (≠ V98), R229 (= R236), D253 (= D260), E258 (= E265), H276 (= H283)
binding 2-keto-D-gluconic acid: G70 (= G73), V71 (≠ A74), G72 (= G75), R229 (= R236), H276 (= H283), S279 (≠ T286), R285 (= R292)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V71 (≠ A74), V99 (≠ T102), L149 (≠ M152), G150 (= G153), R151 (≠ A154), I152 (= I155), T171 (≠ N174), R172 (= R175), V200 (≠ A207), P201 (= P208), S205 (≠ E212), T206 (= T213), V227 (≠ T234), G228 (≠ A235), R229 (= R236), H276 (= H283), A278 (≠ G285)

5v6qB Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with NADP and malonate (see paper)
34% identity, 98% coverage: 6:318/318 of query aligns to 16:312/319 of 5v6qB

query
sites
5v6qB

V

V

T

L

H

E

Q

R

L

L

P

P

K

E

V

M

A

-

F

F

E

E

T

T

I

V

V

-

N

-

D

-

Y

-

K

R

I

I

I

E

M

R

P

A

D

D

K

A

G

A

L

L

I

V

S

T

S

A

C

D

M

M

L

R

D

D

R

V

W

S

I

G

G

I

R

A

C

V

D

S

A

G

L

K

L

L

P

P

T

V

Y

-

A

-

F

-

K

-

V

-

T

-

K

-

E

P

I

L

I

M

D

D

R

A

A

F

T

P

N

S

L

L

E

E

I

I

I

V

A

A

N

N

F

F

G

G

A
x
V

G

G

Y

Y

D

D

N

G

I

V

D

D

V

V

N

S

Y

R

A

A

I

A

T

A

K

R

G

G

I

I

L

V

V

V

T

T

N

N

S

T

P

P

K

D

P

V

V
x
L

I

T

E

E

P

E

T
x
V

A

A

E

D

L

T

A

A

F

I

S

G

L

L

L

L

L

L

N

N

V

T

A

L

R

R

R

L

V

L

S

P

E

Q

C

A

D

E

R

Q

K

W

L

L

R

R

S

Q

S

G

R

R

G

W

I

V

E

R

I

E

D

G

V

A

M

F

E

P

N

L

L

S

G

P

I

L

S

S

L

L

Y

R

G

G

K

R

T

T

L

V

G

G

I

L

V
x
F

G

G

M
x
L

G
|
G

A
x
R

I
|
I

G

G

Q

L

A

A

L

I

A

A

R

R

R

R

A

L

S

E

A

A

C

F

G

G

M

V

R

S

I

I

I

A

Y

Y

Y

H

N
x
T

R
|
R

K

T

R

P

L

-

S

R

Q

E

E

G

I

L

E

G

N

F

V

T

Y

Y

E

H

A

P

D

T

W

L

V

V

S

G

L

M

N

A

E

E

L

A

L

V

A

-

T

-

S

-

D

D

F

T

I

L

S

I

L

V

H

I

A
x
V

P
|
P

A

G

T

T

S

A

E
x
S

T
|
T

Y

L

H

K

M

A

I

V

D

N

I

A

Q

D

Q

V

F

L

N

S

L

A

M

L

K

G

P

P

S

K

V

G

V

V

L

L

I

I

N

N

T
x
V

A
x
G

R
|
R

G

G

N

S

L

T

I

V

N

D

E

E

R

A

V

A

L

L

I

V

H

T

F

A

L

L

Q

Q

E

N

K

G

R

T

I

I

F

A

G

G

A

A

G

G

L

L

D
|
D

V

V

F

F

E

E

S

N

E
|
E

P

P

E

N

I

V

P

P

S

E

E

A

L

L

L

L

Q

S

L

F

D

P

N

N

V

V

L

S

L

L

S

L

P

P

H
|
H

N

V

G
x
A

T

S

G

A

T

S

I

V

D

V

T

T

R

R

V

N

E

A

S

M

T

S

R

D

Y

L

A

V

L

V

Q

D

N

N

I

L

I

K

N

A

Y

W

F

F

E

S

G

T

K

G

T

E

L

A

L

L

S

T

P

P

V

V

T

A

K

E

active site: L96 (≠ V98), R230 (= R236), D254 (= D260), E259 (= E265), H277 (= H283)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V72 (≠ A74), V100 (≠ T102), F148 (≠ V150), L150 (≠ M152), G151 (= G153), R152 (≠ A154), I153 (= I155), T172 (≠ N174), R173 (= R175), V201 (≠ A207), P202 (= P208), S206 (≠ E212), T207 (= T213), V228 (≠ T234), G229 (≠ A235), R230 (= R236), H277 (= H283), A279 (≠ G285)

3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
37% identity, 81% coverage: 44:302/318 of query aligns to 43:304/525 of 3ddnB

query
sites
3ddnB

C

A

D

D

A

A

L

L

L

L

P

V

T

R

Y

S

A

A

F

T

K

T

V

V

T

D

K

A

E

E

I

V

I

L

D

A

R

A

A

A

T

P

N

K

L

L

E

K

I

I

I

V

A

A

N
x
R

F

A

G

G

A
x
V

G

G

Y

L

D

D

N

N

I

V

D

D

V

V

N

D

Y

A

A

A

I

T

T

A

K

R

G

G

I

V

L

L

V

V

T

V

N

N

S

A

P

P

K

T

P

S

V
x
N

I

I

E

H

P

S

T

A

A

A

E

E

L

H

A

A

F

L

S

A

L

L

L

L

L

L

N

A

V

A

A

S

R

R

R

Q

V

I

S

P

E

A

C

A

D

D

R

A

K

S

L

L

R

R

S

E

S

H

R

T

G

W

I

K

E

R

I

S

D

S

V

F

M

S

E

-

N

-

L

-

G

G

I

T

S

E

L

I

Y

F

G

G

K

K

T

T

L

V

G

G

I

V

V

V

G

G

M

L

G

G

A

R

I

I

G

G

Q

Q

A

L

L

V

A

A

R

Q

R

R

A

I

S

A

A

A

C

F

G

G

M

A

R

Y

I

V

I

V

Y

A

Y

Y

N

D

R

-

K

P

R

Y

L

V

S

S

Q

P

E

A

I

R

E

A

N

A

V

Q

Y

L

E

G

A

I

D

E

W

L

V

L

S

S

L

L

N

D

E

D

L

L

L

L

A

A

T

R

S

A

D

D

F

F

I

I

S

S

L

V

H

H

A

L

P

P

A

K

T

T

S

P

E

E

T

T

Y

A

H

G

M

L

I

I

D

D

I

K

Q

E

Q

A

F

L

N

A

L

K

M

T

K

K

P

P

S

G

V

V

V

I

L

I

I

V

N

N

T

A

A

A

R
|
R

G

G

N

G

L

L

I

V

N

D

E

E

R

A

V

A

L

L

I

A

H

D

F

A

L

I

Q

T

E

G

K

G

R

H

I

V

F

R

G

A

A

A

G

G

L

L

D
|
D

V

V

F

F

E

A

S

T

E
|
E

P

P

E

C

I

T

P

D

S

S

E

P

L

L

L

F

Q

E

L

L

D

A

N

Q

V

V

L

V

L

V

S

T

P

P

H
|
H

N

L

G

G

T
x
A

G

S

T

T

I

A

D

E

T

A

R
x
Q

-

D

-

R

-

A

-

G

-

T

-

D

-

V

V

A

E

E

S

S

T

V

R

R

Y

L

A

A

L

L

Q

A

N

G

active site: N97 (≠ V98), R231 (= R236), D255 (= D260), E260 (= E265), H278 (= H283)
binding 2-oxo-3-(phosphonooxy)propanoic acid: R70 (≠ N71), V73 (≠ A74), N97 (≠ V98), A281 (≠ T286), Q287 (≠ R292)

3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
37% identity, 81% coverage: 44:302/318 of query aligns to 42:303/526 of 3dc2A

query
sites
3dc2A

C

A

D

D

A

A

L

L

L

L

P

V

T

R

Y

S

A

A

F

T

K

T

V

V

T

D

K

A

E

E

I

V

I

L

D

A

R

A

A

A

T

P

N

K

L

L

E

K

I

I

I

V

A

A

N

R

F

A

G

G

A

V

G

G

Y

L

D

D

N

N

I

V

D

D

V

V

N

D

Y

A

A

A

I

T

T

A

K

R

G

G

I

V

L

L

V

V

T

V

N

N

S

A

P

P

K

T

P

S

V
x
N

I

I

E

H

P

S

T

A

A

A

E

E

L

H

A

A

F

L

S

A

L

L

L

L

L

L

N

A

V

A

A

S

R

R

R

Q

V

I

S

P

E

A

C

A

D

D

R

A

K

S

L

L

R

R

S

E

S

H

R

T

G

W

I

K

E

R

I

S

D

S

V

F

M

S

E

-

N

-

L

-

G

G

I

T

S

E

L

I

Y

F

G

G

K

K

T

T

L

V

G

G

I

V

V

V

G

G

M

L

G

G

A

R

I

I

G

G

Q

Q

A

L

L

V

A

A

R

Q

R

R

A

I

S

A

A

A

C

F

G

G

M

A

R

Y

I

V

I

V

Y

A

Y

Y

N

D

R

-

K

P

R

Y

L

V

S

S

Q

P

E

A

I

R

E

A

N

A

V

Q

Y

L

E

G

A

I

D

E

W

L

V

L

S

S

L

L

N

D

E

D

L

L

L

L

A

A

T

R

S

A

D

D

F

F

I

I

S

S

L

V

H

H

A

L

P

P

A

K

T

T

S

P

E

E

T

T

Y

A

H

G

M

L

I

I

D

D

I

K

Q

E

Q

A

F

L

N

A

L

K

M

T

K

K

P

P

S

G

V

V

V

I

L

I

I

V

N

N

T

A

A

A

R
|
R

G

G

N

G

L

L

I

V

N

D

E

E

R

A

V

A

L

L

I

A

H

D

F

A

L

I

Q

T

E

G

K

G

R

H

I

V

F

R

G

A

A

A

G

G

L

L

D
|
D

V

V

F

F

E

A

S

T

E
|
E

P

P

E

C

I

T

P

D

S

S

E

P

L

L

L

F

Q

E

L

L

D

A

N

Q

V

V

L

V

L

V

S

T

P

P

H
|
H

N

L

G

G

T

A

G

S

T

T

I

A

D

E

T

A

R

Q

-

D

-

R

-

A

-

G

-

T

-

D

-

V

V

A

E

E

S

S

T

V

R

R

Y

L

A

A

L

L

Q

A

N

G

active site: N96 (≠ V98), R230 (= R236), D254 (= D260), E259 (= E265), H277 (= H283)

Sites not aligning to the query:

binding serine: 458, 460, 461, 462, 463, 464, 465, 484

8wprA Anabaena mcyi r166a with prebound NAD and malate
36% identity, 82% coverage: 51:310/318 of query aligns to 50:309/320 of 8wprA

query
sites
8wprA

Y

Y

A

P

F

T

K

K

V

L

T

D

K

A

E

Q

I

A

I

I

D

G

R

L

A

A

T

K

N

N

L

L

E

K

I

V

I

I

A

S

N

T

F

S

G

G

A

F

G

G

Y

T

D

D

N

A

I

I

D

D

V

I

N

A

Y

A

A

A

I

T

T

K

K

R

G

G

I

I

L

V

V

V

T

V

N

N

S

N

P

P

K

G

P

L

V
x
S

I

T

E

T

P

A

T
x
V

A

T

E

E

L

H

A

T

F

L

S

S

L

M

L

I

L

L

N

A

V

L

A

A

R

K

R

K

V

L

S

T

E

F

C

L

D

N

R

Q

K

C

L

V

R

K

S

A

S

G

R

N

G

Y

I

L

E

I

I

R

D

N

V

Q

M

V

E

Q

N

P

L

-

G

-

I

I

S

Q

L

L

Y

E

G

G

K

K

T

T

L

L

G

G

I

I

V

V

G

G

M

L

G
|
G

A
|
A

I
|
I

G

G

Q

S

A

A

L

V

A

A

R

K

R

I

A

C

S

S

-

T

A

A

C

L

G

Q

M

M

R

R

I

V

I

L

Y

A

Y
|
Y

N
x
D

R
x
P

K
x
Y

R

V

L

P

S

S

Q

G

E

K

I

A

E

D

N

T

V

V

Y

R

E

A

A

T

D

L

W

V

V

Q

S

D

L

L

N

D

E

Y

L

L

L

L

A

T

T

E

S

S

D

D

F

F

I

V

S

S

L

L

H

H

A
x
P

P
x
E

A

L

T

T

S

D

E
|
E

T
|
T

Y

C

H

E

M

M

I

F

D

D

I

L

Q

E

Q

A

F

F

N

K

L

K

M

M

K

K

P

P

S

S

V

A

V

F

L

L

I

I

N

N

T
|
T

A
x
S

R
|
R

G

G

N

K

L

V

I

V

N

R

E

Q

R

P

V

D

L

L

I

V

H

T

F

A

L

I

Q

R

E

E

K

K

R

L

I

I

F

A

G

G

A

A

G

A

L

I

D

D

V

V

F

F

E

E

S

P

E

E

P

P

E

P

-

A

I

I

P

N

S

N

E

P

L

L

L

Y

Q

E

L

F

D

D

N

N

V

V

L

I

L

F

S

S

P

P

H
|
H

N

L

G

A

T
x
G

G

V

T

T

I

P

D

E

T

A

R

G

V

M

E

A

S

A

T

A

R

L

Y

S

A

A

L

A

Q

N

N

Q

I

I

I

L

N

Q

Y

V

F

L

E

Q

G

G

K

E

binding nicotinamide-adenine-dinucleotide: S97 (≠ V98), V101 (≠ T102), G150 (= G153), A151 (= A154), I152 (= I155), Y171 (= Y173), D172 (≠ N174), P173 (≠ R175), Y174 (≠ K176), P205 (≠ A207), E206 (≠ P208), E210 (= E212), T211 (= T213), T232 (= T234), S233 (≠ A235), R234 (= R236), H282 (= H283), G285 (≠ T286)

O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
31% identity, 85% coverage: 44:312/318 of query aligns to 48:312/533 of O43175

query
sites
O43175

C

C

D

E

A

G

L

L

L

I

P

V

T

R

Y

S

A

A

F

T

K

K

V

V

T

T

K

A

E

D

I

V

I

I

D

N

R

A

A

A

T

E

N

K

L

L

E

Q

I

V

I

V

A

G

N

R

F

A

G

G

A
x
T

G

G

Y

V

D

D

N

N

I

V

D

D

V

L

N

E

Y

A

A

A

I

T

T

R

K

K

G

G

I

I

L

L

V

V

T

M

N

N

S

T

P

P

K

N

P

G

V

N

I

S

E

L

P

S

T

A

A

A

E

E

L

L

A

T

F

C

S

G

L

M

L

I

L

M

N

C

V

L

A

A

R

R

R

Q

V

I

S

P

E

Q

C

A

D

T

R

A

K

S

L

M

R

K

S

D

S

G

R

K

G

-

I

-

E

-

I

W

D

E

V
x
R

M

K

E

K

N

F

L

M

G

G

I

T

S

E

L

L

Y

N

G

G

K

K

T

T

L

L

G

G

I

I

V

L

G

G

M

L

G

G

A
x
R

I
|
I

G

G

Q

R

A

E

L

V

A

A

R

T

R

R

A

M

S

Q

A

S

C

F

G

G

M

M

R

K

I

T

I

I

Y

G

Y

Y

N
x
D

R

-

K

P

R

I

L

I

S

S

Q

P

E

E

I

V

E

S

N

A

V

S

Y

F

E

G

A

V

D

Q

W