Comparing WP_009124122.1 NCBI__GCF_000195635.1:WP_009124122.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5d3mA Folate ecf transporter: amppnp bound state (see paper)
27% identity, 44% coverage: 264:474/485 of query aligns to 2:210/280 of 5d3mA
3nhaA Nucleotide binding domain of human abcb6 (adp mg bound structure) (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 41:233/278 of 3nhaA
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
32% identity, 41% coverage: 267:466/485 of query aligns to 2:196/220 of 8tzjA
8bmsA Cryo-em structure of the mutant solitary ecf module 2eq in msp2n2 lipid nanodiscs in the atpase closed and atp-bound conformation (see paper)
26% identity, 44% coverage: 264:474/485 of query aligns to 1:207/278 of 8bmsA
4hluC Structure of the ecfa-a' heterodimer bound to adp (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 5:191/249 of 4hluC
4zirB Crystal structure of ecfaa' heterodimer bound to amppnp (see paper)
26% identity, 41% coverage: 268:466/485 of query aligns to 4:187/247 of 4zirB
3nh9A Nucleotide binding domain of human abcb6 (atp bound structure) (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 35:228/273 of 3nh9A
8bmpA Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
27% identity, 44% coverage: 264:474/485 of query aligns to 2:207/278 of 8bmpA
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
27% identity, 41% coverage: 266:466/485 of query aligns to 5:201/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
27% identity, 41% coverage: 266:466/485 of query aligns to 5:201/592 of 5lj7A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
27% identity, 42% coverage: 267:470/485 of query aligns to 17:210/378 of P69874
Sites not aligning to the query:
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
30% identity, 41% coverage: 267:466/485 of query aligns to 2:197/225 of 8iddA
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
30% identity, 41% coverage: 267:466/485 of query aligns to 2:197/227 of 8igqA
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
30% identity, 41% coverage: 267:466/485 of query aligns to 1:196/229 of A5U7B7
Q9DC29 ATP-binding cassette sub-family B member 6; ABC-type heme transporter ABCB6; EC 7.6.2.5 from Mus musculus (Mouse) (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 590:783/842 of Q9DC29
Sites not aligning to the query:
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
26% identity, 42% coverage: 268:470/485 of query aligns to 7:191/353 of 1vciA
8k7bA Post-occluded structure of human abcb6 w546a mutant (adp/vo4-bound) (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 353:546/590 of 8k7bA
7dnyB Cryo-em structure of the human abcb6 (coproporphyrin iii-bound) (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 337:530/575 of 7dnyB
Sites not aligning to the query:
8yr4A Cryo-em structure of the human abcb6 in complex with cd(ii) :phytochelatin 2 (see paper)
28% identity, 41% coverage: 268:466/485 of query aligns to 350:543/586 of 8yr4A
Sites not aligning to the query:
8w9mC Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
28% identity, 47% coverage: 241:470/485 of query aligns to 1:199/256 of 8w9mC
>WP_009124122.1 NCBI__GCF_000195635.1:WP_009124122.1
MAQPYTIHIAGGVVRNPLVRLARPVTLDFLAGEHIAIVGPNGAGKSLLVDMLTGKYPLRE
GELAYDFSPSATKTAYDNIKYIAFRDTYGSADANYYYQQRWNAHDQEDTPEVREMLGEVA
DSALKGQLFELFRIEPMLDKKIILLSSGELRKFQLTKTLLTAPRILIMDNPFIGLDALTR
ELLFHLLEELSRMDSLQIVLVLSMLDDIPSFITHVVPVYNMTVGEKVEREVYMQAFRGQD
TAVAMDELQQRILDLPYGSGNYTSDEVVKLNKVSIRYDDRTILKELDWTVMRGEKWALSG
ENGAGKSTLLSLVCADNPQSYACDISLFGRKRGTGESIWEIKKHIGYVSPEMHRAYLKNL
PAIEIVASGLHDSIGLYKRPREEQLAVCEWWMDVFGIAGLKDKPFLQLSSGEQRLALLAR
AFVKDPELLILDEPLHGLDTYNRRRVKKIIEAFCHRKDKTMIMVTHYENELPGTITGHLF
LKRNR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory