SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_009124973.1 NCBI__GCF_000195635.1:WP_009124973.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see paper)
54% identity, 99% coverage: 1:410/414 of query aligns to 1:406/418 of P0AFF4

query
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P0AFF4
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H

Query Sequence

>WP_009124973.1 NCBI__GCF_000195635.1:WP_009124973.1
MSIKFRLTAMQFLQFFVWGAWLISLGGYMGGTLHFEGGQIGAIFATMGIASIIMPGLTGI
IADKWVNAERLYGILHLIGAGALIYASTATTYSHMYWAMLLNMLAYMPTLALANTVSYNA
LEKYKMDLIKDFPPIRVWGTVGFICAMWAVDLTGFKTGVAQLYVAAASATLLGCYAFTLP
ACPPMRSEGKTMLSAFGLDALILFKQKKMAIFFLFSMLLGAALQITNTYGDLFLSSFASI
PEYADSFGVKHSVILLSISQMSETLFILAIPFFLKHFGIKRVMLISMFAWVFRFGLFGLG
DPGSGLWMLILSMIVYGMAFDFFNVSGSLFTEMEAHPSIRASAQGLFFMMTNGIGAIIGG
YASGAVVDAFSVYADGGGLISREWTPVWLIFAGYALVIGLLFGAVFRYKHTPEK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory