SitesBLAST
Comparing WP_009287489.1 NCBI__GCF_000336575.1:WP_009287489.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
42% identity, 99% coverage: 2:470/474 of query aligns to 1:465/465 of 3pm9A
- active site: A149 (= A152), L159 (≠ M162)
- binding flavin-adenine dinucleotide: P69 (= P70), Q70 (= Q71), G71 (= G72), G72 (= G73), N73 (≠ H74), T74 (≠ S75), G75 (= G76), L76 (= L77), G79 (= G80), Q80 (≠ A81), L91 (= L94), L133 (= L136), G134 (= G137), A135 (= A138), C139 (= C142), T140 (≠ Q143), G142 (= G145), G143 (= G146), S146 (≠ A149), T147 (= T150), A149 (= A152), G150 (= G153), E200 (= E203), G201 (= G204), I205 (= I208), I206 (≠ V209), E423 (= E428)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
36% identity, 96% coverage: 19:472/474 of query aligns to 24:466/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R332), T337 (≠ L336), K348 (≠ R347), Y379 (= Y380), H381 (= H382), H388 (= H389), H423 (= H429)
- binding flavin-adenine dinucleotide: W39 (= W34), P75 (= P70), Q76 (= Q71), G77 (= G72), G78 (= G73), N79 (≠ H74), T80 (≠ S75), G81 (= G76), M82 (≠ L77), G85 (= G80), S86 (≠ A81), L139 (= L136), G140 (= G137), A141 (= A138), C145 (= C142), G149 (= G146), N150 (= N147), A152 (= A149), T153 (= T150), G157 (= G154), G207 (= G204), I212 (≠ V209), E422 (= E428), N459 (= N465)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
36% identity, 96% coverage: 19:472/474 of query aligns to 24:466/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (= W34), P75 (= P70), G77 (= G72), G78 (= G73), N79 (≠ H74), T80 (≠ S75), G81 (= G76), G85 (= G80), S86 (≠ A81), L139 (= L136), G140 (= G137), A141 (= A138), C145 (= C142), H146 (≠ Q143), G148 (= G145), G149 (= G146), N150 (= N147), A152 (= A149), T153 (= T150), A155 (= A152), E206 (= E203), G207 (= G204), I211 (= I208), I212 (≠ V209), E422 (= E428), N459 (= N465)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R332), T337 (≠ L336), K348 (≠ R347), Y379 (= Y380), H381 (= H382), H388 (= H389), H423 (= H429)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
36% identity, 96% coverage: 19:472/474 of query aligns to 24:466/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (= W34), P75 (= P70), G77 (= G72), G78 (= G73), N79 (≠ H74), T80 (≠ S75), G81 (= G76), G85 (= G80), S86 (≠ A81), L139 (= L136), G140 (= G137), A141 (= A138), C145 (= C142), H146 (≠ Q143), G149 (= G146), N150 (= N147), A152 (= A149), T153 (= T150), A155 (= A152), G157 (= G154), E206 (= E203), G207 (= G204), I211 (= I208), I212 (≠ V209), E422 (= E428), N459 (= N465)
- binding d-malate: M82 (≠ L77), R333 (= R332), T337 (≠ L336), K348 (≠ R347), Y379 (= Y380), H381 (= H382), H388 (= H389), E422 (= E428), H423 (= H429)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
36% identity, 96% coverage: 19:472/474 of query aligns to 24:466/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R332), T337 (≠ L336), K348 (≠ R347), Y379 (= Y380), H381 (= H382), H388 (= H389), N390 (= N391), H423 (= H429)
- binding flavin-adenine dinucleotide: W39 (= W34), P75 (= P70), G77 (= G72), G78 (= G73), N79 (≠ H74), T80 (≠ S75), G81 (= G76), M82 (≠ L77), G85 (= G80), S86 (≠ A81), L139 (= L136), G140 (= G137), A141 (= A138), C145 (= C142), G149 (= G146), N150 (= N147), A152 (= A149), T153 (= T150), A155 (= A152), G157 (= G154), G207 (= G204), I212 (≠ V209), E422 (= E428), H423 (= H429)
- binding zinc ion: H381 (= H382), H388 (= H389), E422 (= E428)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
36% identity, 96% coverage: 19:472/474 of query aligns to 25:467/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (= W34), P76 (= P70), G78 (= G72), G79 (= G73), N80 (≠ H74), T81 (≠ S75), G82 (= G76), M83 (≠ L77), G86 (= G80), S87 (≠ A81), L140 (= L136), A142 (= A138), C146 (= C142), H147 (≠ Q143), G150 (= G146), N151 (= N147), A153 (= A149), T154 (= T150), G208 (= G204), I212 (= I208), I213 (≠ V209), E423 (= E428), N460 (= N465)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
36% identity, 96% coverage: 19:472/474 of query aligns to 77:519/521 of Q8N465
- S109 (≠ T51) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ T69) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G73) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (≠ V91) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (≠ L97) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (= C116) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (= P133) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (= A149) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ P175) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (= G177) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S321) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R332) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (≠ L336) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ H345) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (≠ R347) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- R419 (≠ V368) to H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (≠ C375) to T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H382) binding Zn(2+); mutation to A: Loss of catalytic activity.
- G436 (= G384) to V: slight reduction in catalytic activity
- N439 (= N387) to D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H389) binding Zn(2+); mutation to A: Loss of catalytic activity.
- N443 (= N391) binding (R)-2-hydroxyglutarate; mutation to A: Significantly reduced catalytic activity.
- V444 (≠ I392) to A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (= A399) to V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E428) binding Zn(2+); mutation to A: Loss of catalytic activity.
- H476 (= H429) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- G477 (= G430) to R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
35% identity, 94% coverage: 24:470/474 of query aligns to 50:496/496 of P39976
Sites not aligning to the query:
- 17 modified: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)
P9WIT1 Uncharacterized FAD-linked oxidoreductase Rv2280; EC 1.-.-.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
32% identity, 99% coverage: 1:470/474 of query aligns to 1:456/459 of P9WIT1